Miyakogusa Predicted Gene
- Lj0g3v0311209.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0311209.1 Non Chatacterized Hit- tr|C5WXV1|C5WXV1_SORBI
Putative uncharacterized protein Sb01g046810
OS=Sorghu,58.43,1e-18,E2F-DP heterodimerization region,NULL;
DP,Transcription factor DP, C-terminal,CUFF.21000.1
(267 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC71023 similar to UniRef100_A7PT80 Cluster: Chromosome... 529 e-150
gnl|LJGI|TC72444 similar to UniRef100_Q7XZI4 Cluster: DP1; n=1; ... 389 e-108
gnl|LJGI|AV772739 similar to UniRef100_A7PT80 Cluster: Chromosom... 125 1e-28
>gnl|LJGI|TC71023 similar to UniRef100_A7PT80 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (31%)
Length = 651
Score = 529 bits (267), Expect = e-150
Identities = 267/267 (100%)
Strand = Plus / Plus
Query: 1 atgcaacttgtgcattttgatttcaatagcactccttttgagctgcatgatgacaattat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46 atgcaacttgtgcattttgatttcaatagcactccttttgagctgcatgatgacaattat 105
Query: 61 gttctcaaggcaatgaaatttcatgagagacctgagaatgataatataacacacaatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 gttctcaaggcaatgaaatttcatgagagacctgagaatgataatataacacacaatcct 165
Query: 121 actgatggaggtgaaggttctagcatgtcaggtttgtatcatgcacaggttcctacttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 actgatggaggtgaaggttctagcatgtcaggtttgtatcatgcacaggttcctacttta 225
Query: 181 gtttcaaacccggcagttaggccacctccctcgtcaccacaactacctggaatattaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gtttcaaacccggcagttaggccacctccctcgtcaccacaactacctggaatattaaag 285
Query: 241 gcaagagttaagaatgagcactgatct 267
|||||||||||||||||||||||||||
Sbjct: 286 gcaagagttaagaatgagcactgatct 312
>gnl|LJGI|TC72444 similar to UniRef100_Q7XZI4 Cluster: DP1; n=1; Populus tremula x
Populus tremuloides|Rep: DP1 - Populus tremula x Populus
tremuloides, partial (13%)
Length = 550
Score = 389 bits (196), Expect = e-108
Identities = 217/224 (96%)
Strand = Plus / Plus
Query: 44 tgcatgatgacaattatgttctcaaggcaatgaaatttcatgagagacctgagaatgata 103
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 1 tgcatgatgacaattatgttctcaaggcaatgacatttcatgagagacctgagaatgaaa 60
Query: 104 atataacacacaatcctactgatggaggtgaaggttctagcatgtcaggtttgtatcatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atataacacacaatcctactgatggaggtgaaggttctagcatgtcaggtttgtatcatg 120
Query: 164 cacaggttcctactttagtttcaaacccggcagttaggccacctccctcgtcaccacaac 223
|||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct: 121 cacaggttgctactttagtttcaaacccggcagttaggccgcctccctcatcaccaccac 180
Query: 224 tacctggaatattaaaggcaagagttaagaatgagcactgatct 267
||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 181 tacctggaatattaaaggcaagagttaagaatgagcattgatct 224
>gnl|LJGI|AV772739 similar to UniRef100_A7PT80 Cluster: Chromosome chr8 scaffold_29,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_29, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (7%)
Length = 457
Score = 125 bits (63), Expect = 1e-28
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 177 tttagtttcaaacccggcagttaggccacctccctcgtcaccacaactacctggaatatt 236
|||||||||||||||| | |||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 457 tttagtttcaaacccgaccgttaggccgcctccctcatcaccacccctacctggaatatt 398
Query: 237 aaaggcaagagttaagaatgagcactgatct 267
|||||||||||||||||||||||| ||||||
Sbjct: 397 aaaggcaagagttaagaatgagcattgatct 367