Miyakogusa Predicted Gene
- Lj0g3v0310189.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0310189.1 Non Chatacterized Hit- tr|I1KHA8|I1KHA8_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.05,0,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; PORR,Plant organelle RNA
recognition domain; seg,NU,CUFF.20935.1
(1170 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC70124 weakly similar to UniRef100_A7QVY8 Cluster: Chr... 1279 0.0
gnl|LJGI|BP049887 194 9e-49
>gnl|LJGI|TC70124 weakly similar to UniRef100_A7QVY8 Cluster: Chromosome chr2
scaffold_196, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_196, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (34%)
Length = 682
Score = 1279 bits (645), Expect = 0.0
Identities = 659/666 (98%)
Strand = Plus / Plus
Query: 1 atgcttcgctctcaagtttcgtttctcaccgcgaagaacccacgcgccaccgtggtgggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 atgcttcgctctcaagtttcgtttctcaccgcgaagaacccacgcgccaccgtggtgggt 76
Query: 61 tgcatccgccacaaatcaagcggcggaagaaggccgaagnnnnnnncctaccatcgtgtc 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 77 tgcatccgccacaaatcaagcggcggaagaaggccgaagaaaaaaacctaccatcgtgtc 136
Query: 121 ccggagctagaccgagtaatggagcttcgcaagaagccattgatgatcctccaactcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccggagctagaccgagtaatggagcttcgcaagaagccattgatgatcctccaactcaaa 196
Query: 181 accctaatccaatcgcaacccagaaactcccctctcttcctccgcgacctcgagaagaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 accctaatccaatcgcaacccagaaactcccctctcttcctccgcgacctcgagaagaac 256
Query: 241 gtggggttcgtccgcaaatgggacttcatggcactcatcgagaggcacccgacgattttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gtggggttcgtccgcaaatgggacttcatggcactcatcgagaggcacccgacgattttc 316
Query: 301 cgtgtcgccggagctccgccttccgtttcgctcaccgacaaggctcgccgggtggcgcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cgtgtcgccggagctccgccttccgtttcgctcaccgacaaggctcgccgggtggcgcag 376
Query: 361 gaagaagtacgggctagggagttgatggagccggtgttggttactaacctgaggaagctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gaagaagtacgggctagggagttgatggagccggtgttggttactaacctgaggaagctg 436
Query: 421 ctcatgctctgtgttgactgcagggttccccttgagacgctggagcttgttggggctgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctcatgctctgtgttgactgcagggttccccttgagacgctggagcttgttggggctgag 496
Query: 481 ttgggtcttccctctgattttgaggagtgtttgattgctaagtaccctcagtttttcgca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttgggtcttccctctgattttgaggagtgtttgattgctaagtaccctcagtttttcgca 556
Query: 541 atcaggcgtgttcgtggaagggattttcttcacttggaggattgggattcctctttggct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atcaggcgtgttcgtggaagggattttcttcacttggaggattgggattcctctttggct 616
Query: 601 gtcactgctagagaagctaggttggcacaagaaggagttttgaacacaaagcctaatcag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gtcactgctagagaagctaggttggcacaagaaggagttttgaacacaaagcctaatcag 676
Query: 661 gatcag 666
||||||
Sbjct: 677 gatcag 682
>gnl|LJGI|BP049887
Length = 199
Score = 194 bits (98), Expect = 9e-49
Identities = 132/139 (94%), Gaps = 5/139 (3%)
Strand = Plus / Minus
Query: 1035 agatacataccttggttccaatttgatag--ataagtgtcctttgttggaatttaataat 1092
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 199 agatacataccttggttccnatttgatagnnataagtgtcctttgttggaatttaataat 140
Query: 1093 aaatt-tgtggcactttgtggtagaagaaatactgatctatgtgacagcaacaattcttt 1151
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 139 aaattntgtggcactttgtggtagaagaaatactgatctatgtgacagc-acanttcttt 81
Query: 1152 acaaaccaaggtgtagaag 1170
|| ||||||||||||||||
Sbjct: 80 ac-aaccaaggtgtagaag 63