Miyakogusa Predicted Gene

Lj0g3v0308719.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0308719.1 tr|G7JMP2|G7JMP2_MEDTR Zinc finger CCCH
domain-containing protein OS=Medicago truncatula
GN=MTR_4g10,53,1e-18,seg,NULL; zf-CCCH,Zinc finger, CCCH-type; ZINC
FINGER CCCH DOMAIN-CONTAINING PROTEIN,NULL; PROTEIN P,CUFF.20856.1
         (574 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC73218 similar to UniRef100_A7PCK0 Cluster: Chromosome...    84   1e-15
gnl|LJGI|AV409227 similar to UniRef100_A7PCK0 Cluster: Chromosom...    52   4e-06

>gnl|LJGI|TC73218 similar to UniRef100_A7PCK0 Cluster: Chromosome chr17 scaffold_12,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr17 scaffold_12, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (13%)
          Length = 605

 Score = 83.8 bits (42), Expect = 1e-15
 Identities = 54/58 (93%)
 Strand = Plus / Plus

                                                                     
Query: 474 cctcagtgacaagggtctgcctctgaggcccgaccagaacgtctgctcgcattacagt 531
           ||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 80  cctcagtgacaagggcctgcctctgagacctgaccagaatgtctgctcgcattacagt 137


>gnl|LJGI|AV409227 similar to UniRef100_A7PCK0 Cluster: Chromosome chr17
          scaffold_12, whole genome shotgun sequence; n=1; Vitis
          vinifera|Rep: Chromosome chr17 scaffold_12, whole
          genome shotgun sequence - Vitis vinifera (Grape),
          partial (14%)
          Length = 427

 Score = 52.0 bits (26), Expect = 4e-06
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                            
Query: 9  tgtaagtttggaaaagcttgtcggtatatccacacaagaggtaacagttc 58
          ||||||||||||||||||||   ||||| |||||||||||| | ||||||
Sbjct: 1  tgtaagtttggaaaagcttgcaagtataaccacacaagaggaagcagttc 50