Miyakogusa Predicted Gene

Lj0g3v0308609.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0308609.1 Non Chatacterized Hit- tr|D8TU59|D8TU59_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,27.92,0.000000009,no description,Tetratricopeptide-like helical;
Tetratricopeptide repeats,Tetratricopeptide repeat; c,CUFF.20886.1
         (1446 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC80003 weakly similar to UniRef100_Q56PC1 Cluster: RPG...   319   3e-86

>gnl|LJGI|TC80003 weakly similar to UniRef100_Q56PC1 Cluster: RPGR; n=1; Callithrix
           jacchus|Rep: RPGR - Callithrix jacchus (Common
           marmoset), partial (8%)
          Length = 734

 Score =  319 bits (161), Expect = 3e-86
 Identities = 164/165 (99%)
 Strand = Plus / Plus

                                                                       
Query: 154 ttcagattcaaagacgggatcagccctttcgacgttgttgataagtacgaatctctcgtc 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 ttcagattcaaagacgggatcagccctttcgacgttgttgataagtacgaatctctcgtc 629

                                                                       
Query: 214 ggcaacaaacaaaatgcacttgaacaatgccagcgggaagatgatgtttctggtgcatgc 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggcaacaaacaaaatgcacttgaacaatgccagcgggaagatgatgtttctggtgcatgc 689

                                                        
Query: 274 tttgctgagataatggaaacaatgtattcgaggccgcgcaagaga 318
           ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 690 tttgctgagataatggaaacaatgtattcgaggccgcacaagaga 734