Miyakogusa Predicted Gene

Lj0g3v0308469.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0308469.1 tr|G7EE15|G7EE15_9GAMM Membrane protein
OS=Pseudoalteromonas sp. BSi20652 GN=P20652_0997 PE=3
SV=1,45.1,8.9,seg,NULL,CUFF.20826.1
         (185 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70105 similar to UniRef100_A3NL91 Cluster: Hemaggluti...   222   6e-58
gnl|LJGI|DC598856 similar to UniRef100_Q0B7B8 Cluster: GAF modul...   121   2e-27

>gnl|LJGI|TC70105 similar to UniRef100_A3NL91 Cluster: Hemagglutinin domain protein;
           n=1; Burkholderia pseudomallei 668|Rep: Hemagglutinin
           domain protein - Burkholderia pseudomallei (strain 668),
           partial (7%)
          Length = 760

 Score =  222 bits (112), Expect = 6e-58
 Identities = 118/120 (98%)
 Strand = Plus / Plus

                                                                       
Query: 66  gattattttccctaaggttgcagcactaccaacaccttcttctcctcctgatgacaacca 125
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 106 gattattttccctaaggttgcagcactgccaacaccttcttctcctcctgatgacaacca 165

                                                                       
Query: 126 ccaccgcttggtcactctccttccagaggctacaccatcaccaccgttcctgtcctgatc 185
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 ccaccgcctggtcactctccttccagaggctacaccatcaccaccgttcctgtcctgatc 225


>gnl|LJGI|DC598856 similar to UniRef100_Q0B7B8 Cluster: GAF modulated sigma54 specific
           transcriptional regulator, Fis family; n=1; Burkholderia
           ambifaria AMMD|Rep: GAF modulated sigma54 specific
           transcriptional regulator, Fis family - Burkholderia
           cepacia (strain ATCC 53795 / AMMD), partial (3%)
          Length = 509

 Score =  121 bits (61), Expect = 2e-27
 Identities = 90/99 (90%), Gaps = 3/99 (3%)
 Strand = Plus / Plus

                                                                       
Query: 73  ttccctaaggttgcagcactaccaacaccttcttctcctcctgatgacaacca---ccac 129
           ||||||| ||||||||||| |||||||||| ||||| ||||||| ||||||||   ||||
Sbjct: 1   ttccctatggttgcagcaccaccaacacctccttcttctcctgaggacaaccaccaccac 60

                                                  
Query: 130 cgcttggtcactctccttccagaggctacaccatcacca 168
           ||||||||||||||||||||||| |||||||||||||||
Sbjct: 61  cgcttggtcactctccttccagaagctacaccatcacca 99