Miyakogusa Predicted Gene
- Lj0g3v0305589.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0305589.1 Non Chatacterized Hit- tr|D8SUN4|D8SUN4_SELML
Putative uncharacterized protein OS=Selaginella
moelle,28.32,3e-17,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.20567.1
(1314 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC59497 similar to UniRef100_Q2HU72 Cluster: Steroid nu... 287 9e-77
gnl|LJGI|TC58025 weakly similar to UniRef100_Q2HU72 Cluster: Ste... 161 1e-38
gnl|LJGI|FS322122 similar to UniRef100_Q2HU72 Cluster: Steroid n... 141 1e-32
>gnl|LJGI|TC59497 similar to UniRef100_Q2HU72 Cluster: Steroid nuclear receptor,
ligand-binding; n=1; Medicago truncatula|Rep: Steroid
nuclear receptor, ligand-binding - Medicago truncatula
(Barrel medic), partial (70%)
Length = 1562
Score = 287 bits (145), Expect = 9e-77
Identities = 715/905 (79%), Gaps = 8/905 (0%)
Strand = Plus / Plus
Query: 49 tttcttccttacttcatcggcctttggcttctaggccacatcaaaggtgttattttctgc 108
|||||||||| |||||| || ||| |||||| ||| ||||||||||||| ||||||| |
Sbjct: 292 tttcttcctttcttcattgggcttctgcttcttggcaacatcaaaggtgtcattttcttc 351
Query: 109 ccattgatatgcttaataatgactattgggaactcagctatcatacttggtctttgggtc 168
||||||| |||||||||||| || ||||| ||||| |||||||||||||| ||||||
Sbjct: 352 ccattgacatgcttaataataacaattggcaactctgctatcatacttggactttggcct 411
Query: 169 atacattgcatttggacatattactgtgttgtgagatccaaacaattagggcctttattt 228
|||| |||||||||||||||| ||||||||| | || || |||||||||| |
Sbjct: 412 gcacatgttgtttggacatattactgcgttgtgagagctaagcacatagggccttttctg 471
Query: 229 aagcttgttatgtgcacatgtctgcttccggcgctgttgattttgtggccagtggttggc 288
|||||| |||| ||||||||| | || || | ||||||||||| ||||| |||||||
Sbjct: 472 aagcttattatctgcacatgtgtactaccagtgctgttgatttcatggccgctggttggt 531
Query: 289 attgtaggaagtattgtaggaggagcagcctatggannnnnnncaccaatagttgctact 348
||| | ||||| |||||||| ||||| |||| ||| |||||||| |||| |||
Sbjct: 532 attcttggaagcattgtaggtggagccgccttgggatatctttcaccaatatttgcaact 591
Query: 349 tttgaagctgtagaaggaggaaaagagaacaaaattgtccattgttttattgatggaacc 408
|||||||||||||| | ||||||||| | || | |||| ||||| |||||||| ||
Sbjct: 592 tttgaagctgtagaggaaggaaaagatgataagctcttccactgtttcattgatggtacg 651
Query: 409 tggagcactgttttaaagacttttgata-ttgtcaaggatgtaggaaatgcatgcttcca 467
||||||||| || |||| | || |||| | ||||||| || ||| || ||| |
Sbjct: 652 tggagcact-ttagaaaggagctgcatggttgttagggatgtaagagatgtttgtttcta 710
Query: 468 tacctatttctcggttatggatgacctaaaagaagaggga------aatgggagatatta 521
| |||| || || ||||||||||||||| |||| ||||| ||| | | ||| ||
Sbjct: 711 ttcctacttttcagttatggatgacctacgagaaaagggacctccaaatagaaaatacta 770
Query: 522 tgaaatcaggccactttatgttcctggtgctgtggtggcttcagttctagggatcattat 581
||| ||||||| | |||| ||||||||||| | ||||| ||||| | || ||||| |
Sbjct: 771 tgagatcaggctgcattatcttcctggtgctttaatggctacagttatcggaatcatagt 830
Query: 582 agatgtgcctgttatatcatttgttgccatatacaaaagcccttacatgctttttaaagg 641
|||||||| ||||| |||||| ||||| ||| |||| |||||||||||||||| |||||
Sbjct: 831 tgatgtgccggttatttcatttattgccctatgcaaaggcccttacatgcttttcaaagg 890
Query: 642 gtggaatcgcttgcttcacgacctcattggtcgcgaaggacctttcttggagacaatatg 701
|||| | || ||| |||| ||||||||||| || ||||| ||||||||||||||||||||
Sbjct: 891 gtggcaccggttgtttcatgacctcattggccgtgaaggccctttcttggagacaatatg 950
Query: 702 tgtgcctcttgcaggccttgctatccttttgtggccactggctgttgttggggcagttct 761
||| ||| ||||||| ||||| |||||| ||||||||||||||||| |||||||||| |
Sbjct: 951 tgtaccttttgcaggtcttgccatccttctgtggccactggctgttactggggcagtttt 1010
Query: 762 ggcatcagtaatagctagtatcattcttggtgtccgtgcaggtgttgttgcctatgagga 821
|||||| | |||| ||| || ||||||||| |||||| |||||||| ||| ||||
Sbjct: 1011 ggcatccatgttagcaagtttctttcttggtgcttatgcaggggttgttgcatatcagga 1070
Query: 822 gacttctgtcttttatggccttcggtacattgttgccgctttgtccctatatgatgaata 881
||||| || | |||||| |||| | ||||| ||||||| || |||||||||||
Sbjct: 1071 atcttctttcaagtcgggcctttggtatgtcgttgcatctttgtctctttatgatgaata 1130
Query: 882 cagtaatgatgttcttgacatgcctcaaagatcctgcttcccaaggcctccatttcgaaa 941
| | |||||| ||||||||||||| || || | |||||||| ||||||| || ||| ||
Sbjct: 1131 ctgcaatgatattcttgacatgccagaaggaacttgcttccctaggcctcaatatcggaa 1190
Query: 942 aaagg 946
|||||
Sbjct: 1191 aaagg 1195
Score = 75.8 bits (38), Expect = 6e-13
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 1163 gtaaagagagcagagtcattagtgttgggttgccagcatattgccttctccaggcactct 1222
|||||| ||| || || |||||| |||| |||| |||||||||||| ||||||| |||||
Sbjct: 1409 gtaaagggagtagtgttattagtattggcttgctagcatattgcctgctccagggactct 1468
Query: 1223 tgcgctctgcaaaagcca 1240
|||||||||| |||||||
Sbjct: 1469 tgcgctctgcgaaagcca 1486
>gnl|LJGI|TC58025 weakly similar to UniRef100_Q2HU72 Cluster: Steroid nuclear
receptor, ligand-binding; n=1; Medicago truncatula|Rep:
Steroid nuclear receptor, ligand-binding - Medicago
truncatula (Barrel medic), partial (23%)
Length = 922
Score = 161 bits (81), Expect = 1e-38
Identities = 263/326 (80%)
Strand = Plus / Plus
Query: 49 tttcttccttacttcatcggcctttggcttctaggccacatcaaaggtgttattttctgc 108
|||||||||| |||||| || ||| |||||| ||| ||||||||||||| ||||||| |
Sbjct: 562 tttcttcctttcttcattgggcttctgcttcttggcaacatcaaaggtgtcattttcttc 621
Query: 109 ccattgatatgcttaataatgactattgggaactcagctatcatacttggtctttgggtc 168
||||||| |||||||||||| || ||||| ||||| |||||||||||||| ||||||
Sbjct: 622 ccattgacatgcttaataataacaattggcaactctgctatcatacttggactttggcct 681
Query: 169 atacattgcatttggacatattactgtgttgtgagatccaaacaattagggcctttattt 228
|||| |||||||||||||||| ||||||||| | || || |||||||||| |
Sbjct: 682 gcacatgttgtttggacatattactgcgttgtgagagctaagcacatagggccttttctg 741
Query: 229 aagcttgttatgtgcacatgtctgcttccggcgctgttgattttgtggccagtggttggc 288
|||||| |||| ||||||||| | || || | ||||||||||| ||||| |||||||
Sbjct: 742 aagcttattatctgcacatgtgtactaccagtgctgttgatttcatggccgctggttggt 801
Query: 289 attgtaggaagtattgtaggaggagcagcctatggannnnnnncaccaatagttgctact 348
||| | ||||| |||||||| ||||| |||| ||| |||||||| |||| |||
Sbjct: 802 attcttggaagcattgtaggtggagccgccttgggatatctttcaccaatatttgcaact 861
Query: 349 tttgaagctgtagaaggaggaaaaga 374
|||||||||||||| | |||||||||
Sbjct: 862 tttgaagctgtagaggaaggaaaaga 887
>gnl|LJGI|FS322122 similar to UniRef100_Q2HU72 Cluster: Steroid nuclear receptor,
ligand-binding; n=1; Medicago truncatula|Rep: Steroid
nuclear receptor, ligand-binding - Medicago truncatula
(Barrel medic), partial (20%)
Length = 622
Score = 141 bits (71), Expect = 1e-32
Identities = 221/271 (81%)
Strand = Plus / Plus
Query: 49 tttcttccttacttcatcggcctttggcttctaggccacatcaaaggtgttattttctgc 108
|||||||||| |||||| || ||| |||||| ||| ||||||||||||| ||||||| |
Sbjct: 329 tttcttcctttcttcattgggcttctgcttcttggcaacatcaaaggtgtcattttcttc 388
Query: 109 ccattgatatgcttaataatgactattgggaactcagctatcatacttggtctttgggtc 168
||||||| |||||||||||| || ||||| ||||| |||||||||||||| ||||||
Sbjct: 389 ccattgacatgcttaataataacaattggcaactctgctatcatacttggactttggcct 448
Query: 169 atacattgcatttggacatattactgtgttgtgagatccaaacaattagggcctttattt 228
|||| |||||||||||||||| ||||||||| | || || |||||||||| |
Sbjct: 449 gcacatgttgtttggacatattactgcgttgtgagagctaagcacatagggccttttctg 508
Query: 229 aagcttgttatgtgcacatgtctgcttccggcgctgttgattttgtggccagtggttggc 288
|||||| |||| ||||||||| | || || | ||||||||||| ||||| |||||||
Sbjct: 509 aagcttattatctgcacatgtgtactaccagtgctgttgatttcatggccgctggttggt 568
Query: 289 attgtaggaagtattgtaggaggagcagcct 319
||| | ||||| |||||||| ||||| ||||
Sbjct: 569 attcttggaagcattgtaggtggagccgcct 599