Miyakogusa Predicted Gene

Lj0g3v0305019.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0305019.1 Non Chatacterized Hit- tr|J3MNQ6|J3MNQ6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB07G3,30.95,2e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.20522.1
         (676 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|AV419141 homologue to UniRef100_A7PQZ9 Cluster: Chromos...    86   3e-16
gnl|LJGI|AV767287 similar to UniRef100_A7PQZ9 Cluster: Chromosom...    54   1e-06

>gnl|LJGI|AV419141 homologue to UniRef100_A7PQZ9 Cluster: Chromosome chr6 scaffold_25,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_25, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (12%)
          Length = 301

 Score = 85.7 bits (43), Expect = 3e-16
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                       
Query: 118 gagatcatgtttgagttccctgacatgatggtttgccatgcagactctttcttcattgga 177
           ||||||||||| |||||||| ||||  |||||||||||||||||||| |||||||| |||
Sbjct: 194 gagatcatgttcgagttcccggacaccatggtttgccatgcagactccttcttcatcgga 253

                      
Query: 178 caccccatccc 188
           ||||| |||||
Sbjct: 254 caccctatccc 264


>gnl|LJGI|AV767287 similar to UniRef100_A7PQZ9 Cluster: Chromosome chr6 scaffold_25,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr6 scaffold_25, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (29%)
          Length = 547

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 526 cagctcgtgaagtcaaagaaccaggtgtggtcacctaagcttgaaacaatttcagagtac 585
           ||||| |||| ||| ||| | ||||||||||| || |||||||| || ||||| ||||||
Sbjct: 443 cagcttgtgaggtctaaggatcaggtgtggtcgccaaagcttgagactatttcggagtac 384

                          
Query: 586 aagattaggttttca 600
           |||  ||||||||||
Sbjct: 383 aaggctaggttttca 369