Miyakogusa Predicted Gene

Lj0g3v0304929.3
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0304929.3 tr|F2D4L1|F2D4L1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,65.28,9e-19,Got1,Vesicle
transport protein, Got1/SFT2-like; UNCHARACTERIZED,Vesicle transport
protein, SFT2-like,CUFF.20515.3
         (222 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP050071 similar to UniRef100_A7QEQ0 Cluster: Chromosom...   438   e-123
gnl|LJGI|AV765227 similar to UniRef100_A7QEQ0 Cluster: Chromosom...   145   1e-34

>gnl|LJGI|BP050071 similar to UniRef100_A7QEQ0 Cluster: Chromosome chr16 scaffold_86,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_86, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (41%)
          Length = 507

 Score =  438 bits (221), Expect = e-123
 Identities = 221/221 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgttactgtcattgattgtttttgcgaaacccataaaatttgcattattgttcacctttg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgttactgtcattgattgtttttgcgaaacccataaaatttgcattattgttcacctttg 448

                                                                       
Query: 62  gccacctgttagcagttggaagtacagcctttcttcttgggcctgcacaacaattgcaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gccacctgttagcagttggaagtacagcctttcttcttgggcctgcacaacaattgcaaa 388

                                                                       
Query: 122 tgatgttagacccagttcgtgttttcgcaacagccatattcctcggatgtgtggttgtgg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgatgttagacccagttcgtgttttcgcaacagccatattcctcggatgtgtggttgtgg 328

                                                    
Query: 182 cacttatttgtgctctctgggtaagccctgctctttagatc 222
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacttatttgtgctctctgggtaagccctgctctttagatc 287


>gnl|LJGI|AV765227 similar to UniRef100_A7QEQ0 Cluster: Chromosome chr16 scaffold_86,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr16 scaffold_86, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (42%)
          Length = 415

 Score =  145 bits (73), Expect = 1e-34
 Identities = 73/73 (100%)
 Strand = Plus / Minus

                                                                       
Query: 129 agacccagttcgtgttttcgcaacagccatattcctcggatgtgtggttgtggcacttat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agacccagttcgtgttttcgcaacagccatattcctcggatgtgtggttgtggcacttat 356

                        
Query: 189 ttgtgctctctgg 201
           |||||||||||||
Sbjct: 355 ttgtgctctctgg 343