Miyakogusa Predicted Gene
- Lj0g3v0304359.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0304359.1 Non Chatacterized Hit- tr|F6HZN0|F6HZN0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,31.05,3e-19,Mitochondrial termination factor repeats,Mitochodrial
transcription termination factor-related; mTER,CUFF.20476.1
(612 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BW631473 weakly similar to UniRef100_A7NW61 Cluster: Ch... 795 0.0
gnl|LJGI|TC79714 weakly similar to UniRef100_A7PTX3 Cluster: Chr... 420 e-117
gnl|LJGI|TC80892 weakly similar to UniRef100_A7NW61 Cluster: Chr... 139 2e-32
gnl|LJGI|GO024260 weakly similar to UniRef100_A7NW61 Cluster: Ch... 117 8e-26
gnl|LJGI|TC82521 similar to UniRef100_Q6V4T2 Cluster: TnpA C-ter... 62 4e-09
gnl|LJGI|TC72488 62 4e-09
>gnl|LJGI|BW631473 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 475
Score = 795 bits (401), Expect = 0.0
Identities = 443/462 (95%)
Strand = Plus / Plus
Query: 1 atgttacgcggtcactgtctcagagcttttctccgccgcagcattttctcccaaccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 atgttacgcggtcactgtctcagagcttttctccgccgcagcattttctcccaaccacca 73
Query: 61 ccaacctcaaaatgtcaccatcttctgcaattgaaacccttccattcacccnnnnnnnnn 120
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 ccaacctcaaaatgtcaccatcttctgcaattgaaacccttccattcacccctctctctc 133
Query: 121 nnnnnnaccacttctcattcttctgataaacaatcattccccctttcctacttcacaaac 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 134 ttctctaccacttctcattcttctgataaacaatcattcaccctttcctacttcacaaac 193
Query: 181 acttgtggcttctcatcccaagctgctctcaaagcagccaagcgagttcgtttcgacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 acttgtggcttctcatcccaagctgctctcaaagcagccaagcgagttcgtttcgacacc 253
Query: 241 gcagagaagcctgattcggttattgccttcttcacaaaccacggtttctccatctctcag 300
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 254 gcagagaagcctgattcagttattgccttcttcacaaaccagggtttctccatctctcag 313
Query: 301 acacacagcatcattcgcagggtaccagaggtacttttattcgaccccaccataagggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acacacagcatcattcgcagggtaccagaggtacttttattcgaccccaccataagggtt 373
Query: 361 ttgcccaagtttcaatttctagcctccaagggttttgacatagtcaccactgtgtctagg 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 374 ttgcccaagtttcaatttctagcctccaagggttttgacatagtgaccactgtgtctagg 433
Query: 421 accccgtatttcctgcttaaaagccttgagaatcacattata 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 accccgtatttcctgcttaaaagccttgagaatcacattata 475
>gnl|LJGI|TC79714 weakly similar to UniRef100_A7PTX3 Cluster: Chromosome chr7
scaffold_31, whole genome shotgun sequence; n=2; Vitis
vinifera|Rep: Chromosome chr7 scaffold_31, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 1406
Score = 420 bits (212), Expect = e-117
Identities = 404/468 (86%)
Strand = Plus / Plus
Query: 140 cttctgataaacaatcattccccctttcctacttcacaaacacttgtggcttctcatccc 199
|||||||||||||||| ||| | ||||||||||||| |||| ||||| |||||| ||
Sbjct: 199 cttctgataaacaatccttcactgtttcctacttcactaacaactgtggattctcacacc 258
Query: 200 aagctgctctcaaagcagccaagcgagttcgtttcgacaccgcagagaagcctgattcgg 259
||||||||||||||||| |||| ||||||| |||||| |||| | ||||| || ||||
Sbjct: 259 aagctgctctcaaagcatccaaccgagttcttttcgatgacgcaaacaagcccgactcgg 318
Query: 260 ttattgccttcttcacaaaccacggtttctccatctctcagacacacagcatcattcgca 319
|||| |||||||||||||||||||||||||||||||| |||||||| | |||||| |||
Sbjct: 319 ttatcgccttcttcacaaaccacggtttctccatctcccagacacagaacatcatcggca 378
Query: 320 gggtaccagaggtacttttattcgaccccaccataagggttttgcccaagtttcaatttc 379
|||||||||| | ||| || | ||||||||| |||||||||||| |||||||||||
Sbjct: 379 aggtaccagagcttcttacatgcaaccccaccaaaagggttttgcctaagtttcaattct 438
Query: 380 tagcctccaagggttttgacatagtcaccactgtgtctaggaccccgtatttcctgctta 439
|||||||||| |||| |||| |||||||||||||| |||||| ||||||||||||| |
Sbjct: 439 tagcctccaaaggttctgacgtagtcaccactgtgactaggagcccgtatttcctgtgca 498
Query: 440 aaagccttgagaatcacattatacctgcatttgaatttgtaaggacattctctccatctg 499
|||| |||||||||||||||||||||| |||||||||||||||||| |||| | |||||
Sbjct: 499 aaagtcttgagaatcacattatacctgtatttgaatttgtaaggacgttctgccaatctg 558
Query: 500 atcaaaaagcaatagcttgtgcactttttggttcccattccattactattgctctcatga 559
|| ||| |||||| ||||||| ||| ||||||||| || ||||| ||||| || |||||
Sbjct: 559 atgaaagagcaatcgcttgtgtactatttggttccaataccattgttattgatcgcatga 618
Query: 560 aatcaaaagtaaaattgttgcttcatatgggagtgcctccctcaaaca 607
||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 619 aatcaaaagtaaaattgttgcttaatatgggagtgactccctcaaaca 666
Score = 83.8 bits (42), Expect = 1e-15
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 17 gtctcagagcttttctccgccgcagcattttctcccaaccaccaccaacctcaaaatgtc 76
||||||||||||| ||||| |||||| |||||||||| |||||||||||| ||||||||
Sbjct: 70 gtctcagagctttcttccgctgcagcactttctcccaaacaccaccaaccttaaaatgtc 129
Query: 77 accatcttct 86
||| ||||||
Sbjct: 130 accttcttct 139
>gnl|LJGI|TC80892 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (5%)
Length = 488
Score = 139 bits (70), Expect = 2e-32
Identities = 202/246 (82%)
Strand = Plus / Plus
Query: 144 tgataaacaatcattccccctttcctacttcacaaacacttgtggcttctcatcccaagc 203
|||||||||||| ||| | |||||||||||| || || ||||| |||||| ||||||
Sbjct: 125 tgataaacaatccttcactgtttcctacttcaaaaccaactgtggattctcacaccaagc 184
Query: 204 tgctctcaaagcagccaagcgagttcgtttcgacaccgcagagaagcctgattcggttat 263
|||||||||||| |||||||||||| ||| || |||| | || || ||||| || ||
Sbjct: 185 agctctcaaagcatccaagcgagttctcttcaacgacgcaaacaaacccgattcagtcat 244
Query: 264 tgccttcttcacaaaccacggtttctccatctctcagacacacagcatcattcgcagggt 323
||||||||||||||||||||||| || |||| || ||||||| | ||||| ||||
Sbjct: 245 caccttcttcacaaaccacggtttcaccctctcccaaacacacaacgtcattggcagaac 304
Query: 324 accagaggtacttttattcgaccccaccataagggttttgcccaagtttcaatttctagc 383
||||||| | ||| | ||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 305 accagagcttcttctcttcgaccccaccacaaagcttctgcccaagtttcaatttctagc 364
Query: 384 ctccaa 389
||||||
Sbjct: 365 ctccaa 370
>gnl|LJGI|GO024260 weakly similar to UniRef100_A7NW61 Cluster: Chromosome chr5
scaffold_2, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_2, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (4%)
Length = 544
Score = 117 bits (59), Expect = 8e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 541 attactattgctctcatgaaatcaaaagtaaaattgttgcttcatatgggagtgcctccc 600
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attactattgatcacatgaaatcaaaagtaaaattgttgcttcatatgggagtgcctccc 60
Query: 601 tcaaaca 607
|||||||
Sbjct: 61 tcaaaca 67
>gnl|LJGI|TC82521 similar to UniRef100_Q6V4T2 Cluster: TnpA C-terminal; n=1;
Enterococcus faecium|Rep: TnpA C-terminal - Enterococcus
faecium (Streptococcus faecium), partial (18%)
Length = 484
Score = 61.9 bits (31), Expect = 4e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 343 gaccccaccataagggttttgcccaagtttcaatttctagcctccaa 389
||||||| || |||||| ||||| |||||||||||||||||||||||
Sbjct: 397 gaccccatcaaaagggtattgccaaagtttcaatttctagcctccaa 443
>gnl|LJGI|TC72488
Length = 631
Score = 61.9 bits (31), Expect = 4e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 343 gaccccaccataagggttttgcccaagtttcaatttctagcctccaa 389
||||||| || |||||| ||||| |||||||||||||||||||||||
Sbjct: 374 gaccccatcaaaagggtattgccaaagtttcaatttctagcctccaa 420