Miyakogusa Predicted Gene
- Lj0g3v0304209.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0304209.1 Non Chatacterized Hit- tr|B8B9N6|B8B9N6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,95.65,0.0001,Ribosomal_L1,Ribosomal protein L1; 60S RIBOSOMAL
PROTEIN L10A,NULL; RIBOSOMAL PROTEIN L7AE FAMILY ME,CUFF.20466.1
(334 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57199 545 e-155
gnl|LJGI|TC60297 537 e-152
gnl|LJGI|TC81032 529 e-150
gnl|LJGI|TC60981 513 e-145
gnl|LJGI|BW596235 381 e-105
gnl|LJGI|TC66366 homologue to UniRef100_P59231 Cluster: 60S ribo... 228 2e-59
gnl|LJGI|TC57375 homologue to UniRef100_P59231 Cluster: 60S ribo... 228 2e-59
gnl|LJGI|BW598038 similar to UniRef100_Q8VZB9 Cluster: 60S ribos... 180 4e-45
>gnl|LJGI|TC57199
Length = 1043
Score = 545 bits (275), Expect = e-155
Identities = 275/275 (100%)
Strand = Plus / Plus
Query: 7 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 454
Query: 67 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 514
Query: 127 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 574
Query: 187 ggtaatgttagcatggaggaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggtaatgttagcatggaggaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 634
Query: 247 cttgtctctttgttgaaaaagaactggcaaaatgt 281
|||||||||||||||||||||||||||||||||||
Sbjct: 635 cttgtctctttgttgaaaaagaactggcaaaatgt 669
>gnl|LJGI|TC60297
Length = 824
Score = 537 bits (271), Expect = e-152
Identities = 274/275 (99%)
Strand = Plus / Plus
Query: 7 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 534
Query: 67 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 594
Query: 127 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 654
Query: 187 ggtaatgttagcatggaggaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 246
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggtaatgttagcatggaagaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 714
Query: 247 cttgtctctttgttgaaaaagaactggcaaaatgt 281
|||||||||||||||||||||||||||||||||||
Sbjct: 715 cttgtctctttgttgaaaaagaactggcaaaatgt 749
>gnl|LJGI|TC81032
Length = 1018
Score = 529 bits (267), Expect = e-150
Identities = 273/275 (99%)
Strand = Plus / Plus
Query: 7 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 502
Query: 67 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 562
Query: 127 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 622
Query: 187 ggtaatgttagcatggaggaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 246
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggtaatgttagcatggaagaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 682
Query: 247 cttgtctctttgttgaaaaagaactggcaaaatgt 281
|||||||||||||||||||||||||||| ||||||
Sbjct: 683 cttgtctctttgttgaaaaagaactggccaaatgt 717
>gnl|LJGI|TC60981
Length = 938
Score = 513 bits (259), Expect = e-145
Identities = 271/275 (98%)
Strand = Plus / Plus
Query: 7 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 454
Query: 67 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaat 514
Query: 127 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 186
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 515 gagactaaggctatggtcaaatttcagctcaaaaaggtgctctgcatgggagtcgccgtg 574
Query: 187 ggtaatgttagcatggaggaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 246
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggtaatgttagcatggaagaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 634
Query: 247 cttgtctctttgttgaaaaagaactggcaaaatgt 281
|||||||||||||||||||||||||||||||||||
Sbjct: 635 cttgtctctttgttgaaaaagaactggcaaaatgt 669
>gnl|LJGI|BW596235
Length = 386
Score = 381 bits (192), Expect = e-105
Identities = 192/192 (100%)
Strand = Plus / Plus
Query: 90 tgtcactcaccaagaatcccttgaagcaaaggttaacgagaccaaggctatggtcaaatt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcactcaccaagaatcccttgaagcaaaggttaacgagaccaaggctatggtcaaatt 60
Query: 150 tcagctaaaaaaggtgctctgcatgggagtcgccgtgggtaatgttagcatggaggaaaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcagctaaaaaaggtgctctgcatgggagtcgccgtgggtaatgttagcatggaggaaaa 120
Query: 210 acagatctttcaaaacgtgcaactgagtgttaacttccttgtctctttgttgaaaaagaa 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acagatctttcaaaacgtgcaactgagtgttaacttccttgtctctttgttgaaaaagaa 180
Query: 270 ctggcaaaatgt 281
||||||||||||
Sbjct: 181 ctggcaaaatgt 192
>gnl|LJGI|TC66366 homologue to UniRef100_P59231 Cluster: 60S ribosomal protein
L10a-3; n=1; Arabidopsis thaliana|Rep: 60S ribosomal
protein L10a-3 - Arabidopsis thaliana (Mouse-ear cress),
complete
Length = 807
Score = 228 bits (115), Expect = 2e-59
Identities = 235/275 (85%)
Strand = Plus / Plus
Query: 7 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 66
||||| |||||||| ||||| || |||||||| ||||||||| ||||||||||||| |||
Sbjct: 484 tttttggcttctgaagctgtgatcaagcagatccctcgtcttctgggtcctggtcttaac 543
Query: 67 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 126
|||||||| ||||||||||||||||| |||||||| ||||| || || ||||||| ||
Sbjct: 544 aaggcagggaagttccctacacttgttactcaccaggaatctctagagtcaaaggtcaat 603
Query: 127 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 186
||||||||||||||||| || || ||||| || ||||||||||||||||| || || ||
Sbjct: 604 gagaccaaggctatggtgaagttccagctgaagaaggtgctctgcatgggtgtagctgtt 663
Query: 187 ggtaatgttagcatggaggaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 246
|| || ||||| ||||||||||| || ||||| |||||||| ||| ||||||| ||||||
Sbjct: 664 ggcaacgttagtatggaggaaaagcaaatcttccaaaacgtacaattgagtgtcaacttc 723
Query: 247 cttgtctctttgttgaaaaagaactggcaaaatgt 281
|| ||||| | ||||| || ||||||||||||||
Sbjct: 724 ctcgtctccctcttgaagaaaaactggcaaaatgt 758
>gnl|LJGI|TC57375 homologue to UniRef100_P59231 Cluster: 60S ribosomal protein
L10a-3; n=1; Arabidopsis thaliana|Rep: 60S ribosomal
protein L10a-3 - Arabidopsis thaliana (Mouse-ear cress),
complete
Length = 899
Score = 228 bits (115), Expect = 2e-59
Identities = 235/275 (85%)
Strand = Plus / Plus
Query: 7 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 66
||||| |||||||| ||||| || |||||||| ||||||||| ||||||||||||| |||
Sbjct: 387 tttttggcttctgaagctgtgatcaagcagatccctcgtcttctgggtcctggtcttaac 446
Query: 67 aaggcaggcaagttccctacacttgtcactcaccaagaatcccttgaagcaaaggttaac 126
|||||||| ||||||||||||||||| |||||||| ||||| || || ||||||| ||
Sbjct: 447 aaggcagggaagttccctacacttgttactcaccaggaatctctagagtcaaaggtcaat 506
Query: 127 gagaccaaggctatggtcaaatttcagctaaaaaaggtgctctgcatgggagtcgccgtg 186
||||||||||||||||| || || ||||| || ||||||||||||||||| || || ||
Sbjct: 507 gagaccaaggctatggtgaagttccagctgaagaaggtgctctgcatgggtgtagctgtt 566
Query: 187 ggtaatgttagcatggaggaaaaacagatctttcaaaacgtgcaactgagtgttaacttc 246
|| || ||||| ||||||||||| || ||||| |||||||| ||| ||||||| ||||||
Sbjct: 567 ggcaacgttagtatggaggaaaagcaaatcttccaaaacgtacaattgagtgtcaacttc 626
Query: 247 cttgtctctttgttgaaaaagaactggcaaaatgt 281
|| ||||| | ||||| || ||||||||||||||
Sbjct: 627 ctcgtctccctcttgaagaaaaactggcaaaatgt 661
>gnl|LJGI|BW598038 similar to UniRef100_Q8VZB9 Cluster: 60S ribosomal protein L10a-1;
n=1; Arabidopsis thaliana|Rep: 60S ribosomal protein
L10a-1 - Arabidopsis thaliana (Mouse-ear cress), partial
(58%)
Length = 486
Score = 180 bits (91), Expect = 4e-45
Identities = 97/99 (97%)
Strand = Plus / Plus
Query: 7 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tttttagcttctgaggctgtcattaagcagattcctcgtcttttgggtcctggtctcaac 447
Query: 67 aaggcaggcaagttccctacacttgtcactcaccaagaa 105
|||| ||||||||||||||| ||||||||||||||||||
Sbjct: 448 aaggaaggcaagttccctacgcttgtcactcaccaagaa 486