Miyakogusa Predicted Gene

Lj0g3v0303699.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0303699.1 tr|B9I7G5|B9I7G5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_894812 PE=4
SV=1,56.25,7e-19,PPR,Pentatricopeptide repeat; PPR: pentatricopeptide
repeat domain,Pentatricopeptide repeat; PENTATR,CUFF.20422.1
         (333 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC68036 weakly similar to UniRef100_A7P0Y7 Cluster: Chr...   214   3e-55

>gnl|LJGI|TC68036 weakly similar to UniRef100_A7P0Y7 Cluster: Chromosome chr19
           scaffold_4, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr19 scaffold_4, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (44%)
          Length = 944

 Score =  214 bits (108), Expect = 3e-55
 Identities = 122/124 (98%), Gaps = 2/124 (1%)
 Strand = Plus / Plus

                                                                       
Query: 211 ttgaagggaatgaatatggtgccgacaacaggcatgtacaatgccataatggcagaatgt 270
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 8   ttgaagggaatgaatatggtgc-gacaacaggcatgtacaatgccataatggcagaatgt 66

                                                                       
Query: 271 tttcgagagagaaacattagtgatgggg-gagggtctttgaacaaatgcaatgtgctgat 329
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 67  tttcgagagagaaacattagtgatggggtgagggtctttgaacaaatgcaatgtgctgat 126

               
Query: 330 ataa 333
           ||||
Sbjct: 127 ataa 130