Miyakogusa Predicted Gene

Lj0g3v0302969.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0302969.1 Non Chatacterized Hit- tr|K3Y7Y3|K3Y7Y3_SETIT
Uncharacterized protein OS=Setaria italica GN=Si010324,36.84,2e-19,no
description,Pseudouridine synthase I, TruA,
C-terminal,gene.g23583.t1.1
         (408 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77625 homologue to UniRef100_Q1SKV8 Cluster: TRNA pse...   178   2e-44
gnl|LJGI|BP039630 similar to UniRef100_A7QCG7 Cluster: Pseudouri...    90   1e-17

>gnl|LJGI|TC77625 homologue to UniRef100_Q1SKV8 Cluster: TRNA pseudouridine synthase;
           n=1; Medicago truncatula|Rep: TRNA pseudouridine
           synthase - Medicago truncatula (Barrel medic), partial
           (22%)
          Length = 689

 Score =  178 bits (90), Expect = 2e-44
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                       
Query: 300 ggttaggcttcttgttggtgttcttaaagctgtcggcacaggaaacttgacaattccaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  ggttaggcttcttgttggtgttcttaaagctgtcggcacaggaaacttgacaattccaga 158

                                         
Query: 360 cgttgaaagaattctgaatgcgaagacggt 389
           ||||||||||||||||||||||||||||||
Sbjct: 159 cgttgaaagaattctgaatgcgaagacggt 188


>gnl|LJGI|BP039630 similar to UniRef100_A7QCG7 Cluster: Pseudouridylate synthase; n=1;
           Vitis vinifera|Rep: Pseudouridylate synthase - Vitis
           vinifera (Grape), partial (35%)
          Length = 550

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 1   atgaaccttctgtggttcgaaaggctgtcaaccatttcttacaga 45
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgaaccttctgtggttcgaaaggctgtcaaccatttcttacaga 456