Miyakogusa Predicted Gene

Lj0g3v0302599.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0302599.1 Non Chatacterized Hit- tr|K3ZCA9|K3ZCA9_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si024183,32.79,4.2,coiled-coil,NULL; seg,NULL,CUFF.20339.1
         (273 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC595705 similar to UniRef100_Q0DJJ4 Cluster: Os05g0272...   196   5e-50
gnl|LJGI|TC63944 similar to UniRef100_A7P7U7 Cluster: Chromosome...    54   4e-07

>gnl|LJGI|DC595705 similar to UniRef100_Q0DJJ4 Cluster: Os05g0272300 protein; n=1;
           Oryza sativa Japonica Group|Rep: Os05g0272300 protein -
           Oryza sativa subsp. japonica (Rice), partial (8%)
          Length = 295

 Score =  196 bits (99), Expect = 5e-50
 Identities = 99/99 (100%)
 Strand = Plus / Minus

                                                                       
Query: 174 cctgcggtggtggccggcggtggagaggcggcgcacgctggagaggacggcggaggagag 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  cctgcggtggtggccggcggtggagaggcggcgcacgctggagaggacggcggaggagag 40

                                                  
Query: 234 gacgggcggcgctggtttccttctctggttccgttcgtg 272
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  gacgggcggcgctggtttccttctctggttccgttcgtg 1


>gnl|LJGI|TC63944 similar to UniRef100_A7P7U7 Cluster: Chromosome chr3 scaffold_8,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr3 scaffold_8, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (10%)
          Length = 738

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 175 ctgcggtggtggccggcggtggagagg 201
           |||||||||||||||||||||||||||
Sbjct: 128 ctgcggtggtggccggcggtggagagg 102