Miyakogusa Predicted Gene
- Lj0g3v0302589.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0302589.1 tr|G7JKR7|G7JKR7_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_4g030750 PE=4 SV=1,31.67,7e-19,FBOX,F-box domain,
cyclin-like; A Receptor for Ubiquitination Targets,F-box domain,
cyclin-like; seg,CUFF.20338.1
(829 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP057238 similar to UniRef100_O48542 Cluster: Peptide t... 652 0.0
gnl|LJGI|BW626991 weakly similar to UniRef100_A7PQD5 Cluster: Ch... 70 2e-11
gnl|LJGI|TC57901 similar to UniRef100_A2Q2H0 Cluster: F-box prot... 70 2e-11
gnl|LJGI|FS318183 weakly similar to UniRef100_A7Q9Q9 Cluster: Ch... 68 9e-11
gnl|LJGI|TC65982 weakly similar to UniRef100_A4UV34 Cluster: F-b... 68 9e-11
gnl|LJGI|TC76079 weakly similar to UniRef100_Q2HWB4 Cluster: Cyc... 58 9e-08
gnl|LJGI|TC67756 similar to UniRef100_A2Q2H0 Cluster: F-box prot... 58 9e-08
gnl|LJGI|FS324043 weakly similar to UniRef100_Q2HWB4 Cluster: Cy... 54 1e-06
gnl|LJGI|TC79393 54 1e-06
gnl|LJGI|TC73199 weakly similar to UniRef100_Q2HS67 Cluster: Cyc... 54 1e-06
gnl|LJGI|TC66505 similar to UniRef100_Q2HS67 Cluster: Cyclin-lik... 54 1e-06
>gnl|LJGI|BP057238 similar to UniRef100_O48542 Cluster: Peptide transporter; n=1;
Hordeum vulgare|Rep: Peptide transporter - Hordeum
vulgare, partial (2%)
Length = 434
Score = 652 bits (329), Expect = 0.0
Identities = 329/329 (100%)
Strand = Plus / Minus
Query: 501 cggctatgatgaatcacgtgacacttacaaggctgtgatggctctttgccatagtataga 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cggctatgatgaatcacgtgacacttacaaggctgtgatggctctttgccatagtataga 375
Query: 561 gcccgagcccaaaatggaaacaactgtttactgcatgggtgatagttgttggagaaagat 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gcccgagcccaaaatggaaacaactgtttactgcatgggtgatagttgttggagaaagat 315
Query: 621 ttcgagcagccctagttcctcggttttgctacagcaattcgatggtcagtttgtaggtgg 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttcgagcagccctagttcctcggttttgctacagcaattcgatggtcagtttgtaggtgg 255
Query: 681 ctgtgttaactggttagcacttgacaacttgaatggtccaaactatgagtggcaaagtgt 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ctgtgttaactggttagcacttgacaacttgaatggtccaaactatgagtggcaaagtgt 195
Query: 741 tactctagaccagttggtgattgtttgctttcacatgcgtgaggaggcatatacgtattt 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tactctagaccagttggtgattgtttgctttcacatgcgtgaggaggcatatacgtattt 135
Query: 801 gtcattaccggagggtgttagtctctgaa 829
|||||||||||||||||||||||||||||
Sbjct: 134 gtcattaccggagggtgttagtctctgaa 106
>gnl|LJGI|BW626991 weakly similar to UniRef100_A7PQD5 Cluster: Chromosome chr18
scaffold_24, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr18 scaffold_24, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (12%)
Length = 459
Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 93 gtgcgtttccaagtcatggaaatcactcatctctgatgacaaa 135
|||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 172 gtgcgtttgcaaatcatggaaatcactcatctctgatgacaaa 214
>gnl|LJGI|TC57901 similar to UniRef100_A2Q2H0 Cluster: F-box protein interaction
domain; n=1; Medicago truncatula|Rep: F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 1406
Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 93 gtgcgtttccaagtcatggaaatcactcatctctgatgacaaa 135
|||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 114 gtgcgtttgcaaatcatggaaatcactcatctctgatgacaaa 156
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 586 gtttactgcatgggtgatagttgttggagaaagatttcgagca 628
||||| |||| |||||||||| ||||||||| |||||||||||
Sbjct: 604 gtttattgcaagggtgatagtggttggagaacgatttcgagca 646
>gnl|LJGI|FS318183 weakly similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5
scaffold_67, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_67, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (11%)
Length = 790
Score = 67.9 bits (34), Expect = 9e-11
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 49 gaaatcctatcatggctttcggtgaagaatctcatgcggctgaggtgcgtttccaagtca 108
|||||| ||||||||||| ||||||||| ||| |||| | ||||||| |||||||||
Sbjct: 87 gaaatcttatcatggcttccggtgaagactctgttgcgattccggtgcgtgtccaagtca 146
Query: 109 tggaaatcactcatctctgatgacaaagccttcacaaaacttcacctcaa 158
|||||||| || ||||| || |||||| | ||||| || || ||||||||
Sbjct: 147 tggaaatccctaatctccgacgacaaatcgttcacgaagctgcacctcaa 196
Score = 60.0 bits (30), Expect = 2e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 571 aaaatggaaacaactgtttactgcatgggtgatagttgttggagaaagatttcgagca 628
|||||||| |||| ||||| |||||||||||| ||||||||||||| |||||||||
Sbjct: 676 aaaatggagacaatagtttattgcatgggtgatgcttgttggagaaaggtttcgagca 733
>gnl|LJGI|TC65982 weakly similar to UniRef100_A4UV34 Cluster: F-box domain-containing
protein; n=2; Solanum|Rep: F-box domain-containing
protein - Solanum tuberosum (Potato), partial (12%)
Length = 1581
Score = 67.9 bits (34), Expect = 9e-11
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 26 ttctccctccggaactcttaatggaaatcctatcatggctttcggtgaagaatctcatgc 85
|||||||||| |||||||| | ||||||| | |||||||| | ||||||| |||||||
Sbjct: 201 ttctccctccagaactcttgacggaaatcttctcatggctacccgtgaagaccctcatgc 260
Query: 86 ggctgaggtgcgtttccaagtcatggaaatcact 119
| | |||||||||||||||||||||||||||
Sbjct: 261 gatttgcgtgcgtttccaagtcatggaaatcact 294
>gnl|LJGI|TC76079 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (11%)
Length = 818
Score = 58.0 bits (29), Expect = 9e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 53 tcctatcatggctttcggtgaagaatctcatgcggctgaggtgcgtttccaagtcatgga 112
|||||||||||||| ||||||| |||||||||| || |||||||| | |||||| ||||
Sbjct: 97 tcctatcatggcttccggtgaaacatctcatgcgactcaggtgcgtgtgcaagtcctgga 156
Query: 113 a 113
|
Sbjct: 157 a 157
>gnl|LJGI|TC67756 similar to UniRef100_A2Q2H0 Cluster: F-box protein interaction
domain; n=1; Medicago truncatula|Rep: F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (10%)
Length = 644
Score = 58.0 bits (29), Expect = 9e-08
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 97 gtttccaagtcatggaaatcactcatctctgatgacaaagccttcacaaaacttcac 153
|||||||||||||||||||||||||||| | | |||| || ||||| |||||||||
Sbjct: 203 gtttccaagtcatggaaatcactcatctatcaagacagagacttcaagaaacttcac 259
>gnl|LJGI|FS324043 weakly similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 574
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 93 gtgcgtttccaagtcatggaaatcactcatctctgatgacaaa 135
|||||||| ||| ||||||||||||||||||||| | ||||||
Sbjct: 147 gtgcgtttgcaaatcatggaaatcactcatctctaacgacaaa 189
>gnl|LJGI|TC79393
Length = 697
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 592 tgcatgggtgatagttgttggagaaagatttcgag 626
||||| |||||||||||||||||| ||||||||||
Sbjct: 54 tgcatcggtgatagttgttggagacagatttcgag 88
>gnl|LJGI|TC73199 weakly similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box;
F-box protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (11%)
Length = 654
Score = 54.0 bits (27), Expect = 1e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 93 gtgcgtttccaagtcatggaaatcactcatctctgatgacaaa 135
|||||||| ||| ||||||||||||||||||||| | ||||||
Sbjct: 117 gtgcgtttgcaaatcatggaaatcactcatctctaacgacaaa 159
>gnl|LJGI|TC66505 similar to UniRef100_Q2HS67 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (17%)
Length = 1292
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 669 gtttgtaggtggctgtgttaactggttagca 699
||||||||||||||||||||| |||||||||
Sbjct: 707 gtttgtaggtggctgtgttaattggttagca 737
Score = 52.0 bits (26), Expect = 6e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 93 gtgcgtttccaagtcatggaaatcactcatctct 126
|||||||| ||||||||||||||| |||||||||
Sbjct: 167 gtgcgtttgcaagtcatggaaatccctcatctct 200