Miyakogusa Predicted Gene

Lj0g3v0301929.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0301929.1 Non Chatacterized Hit- tr|K0K9P2|K0K9P2_9PSEU
Putative deacetylase OS=Saccharothrix espanaensis DSM
,40.28,8e-18,Hist_deacetyl,Histone deacetylase domain; HISTONE
DEACETYLASE-RELATED,NULL; HISTONE DEACETYLASE,Hist,CUFF.20289.1
         (411 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP079770 similar to UniRef100_Q2HSH7 Cluster: Histone d...   242   1e-63

>gnl|LJGI|BP079770 similar to UniRef100_Q2HSH7 Cluster: Histone deacetylase
           superfamily; n=1; Medicago truncatula|Rep: Histone
           deacetylase superfamily - Medicago truncatula (Barrel
           medic), partial (27%)
          Length = 459

 Score =  242 bits (122), Expect = 1e-63
 Identities = 125/126 (99%)
 Strand = Plus / Minus

                                                                       
Query: 280 caggactcaagtgcatttgatccaaatggaaggcaatgcttaacaatggagggctacaga 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 caggactcaagtgcatttgatccaaatggaaggcaatgcttaacaatggagggctacaga 400

                                                                       
Query: 340 gaaattgggcgaatagttcatggtcttgcagcaaagcacagtgatgggcgccttctaatt 399
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 399 gaaattgggcgaatagttcatggtcttgcagcaaagcacagtgatggacgccttctaatt 340

                 
Query: 400 gtccag 405
           ||||||
Sbjct: 339 gtccag 334