Miyakogusa Predicted Gene
- Lj0g3v0301719.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0301719.1 tr|B9HQ41|B9HQ41_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_648978 PE=4
SV=1,68.95,0,seg,NULL; UBA,Ubiquitin-associated/translation elongation
factor EF1B, N-terminal, eukaryote; OTU,Ov,CUFF.20271.1
(1557 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74414 similar to UniRef100_A7QF76 Cluster: Chromosome... 833 0.0
gnl|LJGI|TC79350 648 0.0
gnl|LJGI|GO012505 homologue to UniRef100_Q7YZH1 Cluster: PHD fin... 476 e-133
>gnl|LJGI|TC74414 similar to UniRef100_A7QF76 Cluster: Chromosome undetermined
scaffold_87, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_87, whole
genome shotgun sequence - Vitis vinifera (Grape), partial
(25%)
Length = 556
Score = 833 bits (420), Expect = 0.0
Identities = 420/420 (100%)
Strand = Plus / Plus
Query: 1138 attaaagctcagcaagaccaacagatcgataatgcacttttagctgagggacggttttac 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attaaagctcagcaagaccaacagatcgataatgcacttttagctgagggacggttttac 60
Query: 1198 tctgatcttgagctcacagagaaggaaattgaacgtgccgtgattgaagcttctcgggct 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctgatcttgagctcacagagaaggaaattgaacgtgccgtgattgaagcttctcgggct 120
Query: 1258 gagtatattgctaatgatacatttaagcaccaacttggttataaagaatcctctacatca 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagtatattgctaatgatacatttaagcaccaacttggttataaagaatcctctacatca 180
Query: 1318 aatgctgagccatcgtcttctggagcaagatcatcaggtagggatccgaagatggaaccc 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatgctgagccatcgtcttctggagcaagatcatcaggtagggatccgaagatggaaccc 240
Query: 1378 gtgaaggagaatgattctggtcttagctggagtatgcagatggtgctatcaatgggattc 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgaaggagaatgattctggtcttagctggagtatgcagatggtgctatcaatgggattc 300
Query: 1438 agttacctacaagcgattgaggcctacagcatatttggggatgatgttgattctatgatt 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agttacctacaagcgattgaggcctacagcatatttggggatgatgttgattctatgatt 360
Query: 1498 tgttacctgttggaaactggcagtagcagcagacggaaaggaaaggccactgaataatta 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgttacctgttggaaactggcagtagcagcagacggaaaggaaaggccactgaataatta 420
>gnl|LJGI|TC79350
Length = 746
Score = 648 bits (327), Expect = 0.0
Identities = 327/327 (100%)
Strand = Plus / Plus
Query: 1 atgactcgaatcttggttcagcgcggttcctctggtggtggttcttcttcgaaccagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 atgactcgaatcttggttcagcgcggttcctctggtggtggttcttcttcgaaccagaat 479
Query: 61 ttgagccgctctccggctccggttgccaaagatgaggaatgtggagaggaggtgcctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttgagccgctctccggctccggttgccaaagatgaggaatgtggagaggaggtgcctggt 539
Query: 121 ggacaagttgctgttggtgatgagattctggagtttgctgggagtagtgactgtaatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggacaagttgctgttggtgatgagattctggagtttgctgggagtagtgactgtaatagg 599
Query: 181 gctaagagtgatgaagttttgatggagagtcttgatcttgagccgaatgagagcacccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gctaagagtgatgaagttttgatggagagtcttgatcttgagccgaatgagagcacccca 659
Query: 241 ttaggcgatgatgaggttactgatgccggcggcaaagatgttaaggaagatgttgcggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttaggcgatgatgaggttactgatgccggcggcaaagatgttaaggaagatgttgcggat 719
Query: 301 ggacaagaattggcgagagggttcagt 327
|||||||||||||||||||||||||||
Sbjct: 720 ggacaagaattggcgagagggttcagt 746
>gnl|LJGI|GO012505 homologue to UniRef100_Q7YZH1 Cluster: PHD finger protein
rhinoceros; n=1; Drosophila melanogaster|Rep: PHD finger
protein, partial (0%)
Length = 595
Score = 476 bits (240), Expect = e-133
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 1 atgactcgaatcttggttcagcgcggttcctctggtggtggttcttcttcgaaccagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atgactcgaatcttggttcagcgcggttcctctggtggtggttcttcttcgaaccagaat 415
Query: 61 ttgagccgctctccggctccggttgccaaagatgaggaatgtggagaggaggtgcctggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ttgagccgctctccggctccggttgccaaagatgaggaatgtggagaggaggtgcctggt 475
Query: 121 ggacaagttgctgttggtgatgagattctggagtttgctgggagtagtgactgtaatagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggacaagttgctgttggtgatgagattctggagtttgctgggagtagtgactgtaatagg 535
Query: 181 gctaagagtgatgaagttttgatggagagtcttgatcttgagccgaatgagagcacccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gctaagagtgatgaagttttgatggagagtcttgatcttgagccgaatgagagcacccca 595