Miyakogusa Predicted Gene
- Lj0g3v0301409.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0301409.3 tr|G7J9L8|G7J9L8_MEDTR Mediator of RNA polymerase
II transcription subunit OS=Medicago truncatula GN,82.98,0,seg,NULL;
MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13,NULL; FAMILY
NOT NAMED,NULL; Med13_,CUFF.20383.3
(4776 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS322854 weakly similar to UniRef100_A7P086 Cluster: Ch... 1314 0.0
gnl|LJGI|BP033564 similar to UniRef100_A7P090 Cluster: Chromosom... 547 e-154
gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chr... 54 8e-06
gnl|LJGI|TC74641 54 8e-06
>gnl|LJGI|FS322854 weakly similar to UniRef100_A7P086 Cluster: Chromosome chr6
scaffold_3, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr6 scaffold_3, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (15%)
Length = 679
Score = 1314 bits (663), Expect = 0.0
Identities = 675/679 (99%)
Strand = Plus / Plus
Query: 967 ggtgcagcaccaccctcttctccctatgttgaaggatcagagagtaagaatggagtggta 1026
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 ggtgcagcaccaccctcttctccctatgttgaaggatattaaagtaagaatggagtggta 60
Query: 1027 ttcaacacaaaaacaggttctggaaaacatgatgcaagtatgagtctccactcaaaaaat 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttcaacacaaaaacaggttctggaaaacatgatgcaagtatgagtctccactcaaaaaat 120
Query: 1087 tattatacttttgttcagagcaggaaagacttaaatgataaaaaaccagttacatgcaat 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tattatacttttgttcagagcaggaaagacttaaatgataaaaaaccagttacatgcaat 180
Query: 1147 gataatagcattgctaaatctgaggggataggaccacctcagttctcaaacattggttct 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gataatagcattgctaaatctgaggggataggaccacctcagttctcaaacattggttct 240
Query: 1207 aatgctgttgtcaagtctgttttgaggaagatgactgaaggcacaaatgaaacagagcat 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatgctgttgtcaagtctgttttgaggaagatgactgaaggcacaaatgaaacagagcat 300
Query: 1267 tcccttctatcggcgaaaactttgttggcaactgatatctcgtgtgcaatgttgcaagca 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcccttctatcggcgaaaactttgttggcaactgatatctcgtgtgcaatgttgcaagca 360
Query: 1327 tcaatgtgcaggtcacgacacgttcttttatcttccagtaacctcattcctgttggtttg 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaatgtgcaggtcacgacacgttcttttatcttccagtaacctcattcctgttggtttg 420
Query: 1387 aataggtcatctggggtttcatttgtgaatcaccttcctattgacccaagtaccaacacg 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aataggtcatctggggtttcatttgtgaatcaccttcctattgacccaagtaccaacacg 480
Query: 1447 gataatatatctgggaagtatgaagtgaagaagaaagaaaacataccggttagaattgca 1506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gataatatatctgggaagtatgaagtgaagaagaaagaaaacataccggttagaattgca 540
Query: 1507 ggtgatattgatggaggaatactggatgggcatctcaatgcacctgttggtgtttggcgt 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggtgatattgatggaggaatactggatgggcatctcaatgcacctgttggtgtttggcgt 600
Query: 1567 actgtaggtgcttctaaagttgtaaaaccttcaaattcgccaaacatggaaattggtcct 1626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 actgtaggtgcttctaaagttgtaaaaccttcaaattcgccaaacatggaaattggtcct 660
Query: 1627 tccttttctcataattcat 1645
|||||||||||||||||||
Sbjct: 661 tccttttctcataattcat 679
>gnl|LJGI|BP033564 similar to UniRef100_A7P090 Cluster: Chromosome chr6 scaffold_3,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr6 scaffold_3, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (10%)
Length = 512
Score = 547 bits (276), Expect = e-154
Identities = 278/279 (99%)
Strand = Plus / Minus
Query: 3557 aaaagactcatccaagcttgcattgctgctatggatggacagaagactggcgttggcttg 3616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaaagactcatccaagcttgcattgctgctatggatggacagaagactggcgttggcttg 453
Query: 3617 tttgcatctggacagactcaagaggagaattgcttgactgcaatattttcccttttggtg 3676
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 452 tttgcatctggacagactcaagaggagaattgcttgactgcnatattttcccttttggtg 393
Query: 3677 gaataagcagtaggcaggatacgaaggggttgcagtgcctatttgttcaagttcttcagc 3736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaataagcagtaggcaggatacgaaggggttgcagtgcctatttgttcaagttcttcagc 333
Query: 3737 aaggctgtttgatacttcaatcttgtgactctggccttgcaaagcctcgagattttgtga 3796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaggctgtttgatacttcaatcttgtgactctggccttgcaaagcctcgagattttgtga 273
Query: 3797 tagcccgcattggaggtttctatgagcttgagtaccttg 3835
|||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tagcccgcattggaggtttctatgagcttgagtaccttg 234
>gnl|LJGI|TC82599 weakly similar to UniRef100_A7PJG0 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 1411
Score = 54.0 bits (27), Expect = 8e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2308 tatcaggatgattggctcaagacatcagcaa 2338
|||||||||||||||||||||| ||||||||
Sbjct: 1140 tatcaggatgattggctcaagatatcagcaa 1170
>gnl|LJGI|TC74641
Length = 698
Score = 54.0 bits (27), Expect = 8e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 2308 tatcaggatgattggctcaagacatcagcaa 2338
|||||||||||||||||||||| ||||||||
Sbjct: 191 tatcaggatgattggctcaagatatcagcaa 221