Miyakogusa Predicted Gene
- Lj0g3v0300899.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0300899.1 tr|I0Z284|I0Z284_9CHLO Photosystem I reaction
centre subunit VI OS=Coccomyxa subellipsoidea C-169 PE,45.95,1e-18,no
description,NULL; PSI_PsaH,Photosystem I PsaH, reaction centre subunit
VI; seg,NULL,CUFF.20342.1
(435 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60512 homologue to UniRef100_Q06H28 Cluster: Photosys... 862 0.0
gnl|LJGI|DC598427 homologue to UniRef100_Q06H28 Cluster: Photosy... 484 e-136
gnl|LJGI|AV780313 homologue to UniRef100_Q06H28 Cluster: Photosy... 339 9e-93
>gnl|LJGI|TC60512 homologue to UniRef100_Q06H28 Cluster: Photosystem I psaH protein;
n=1; Arachis hypogaea|Rep: Photosystem I psaH protein -
Arachis hypogaea (Peanut), complete
Length = 732
Score = 862 bits (435), Expect = 0.0
Identities = 435/435 (100%)
Strand = Plus / Plus
Query: 1 atggcttctcttgctaccttagctgctgttcaaccagctgcaatcaatggtcttgctgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atggcttctcttgctaccttagctgctgttcaaccagctgcaatcaatggtcttgctgga 124
Query: 61 agttcccttaatggaactaagctctccttcaagtcctctcgccagagcatcaaatccaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agttcccttaatggaactaagctctccttcaagtcctctcgccagagcatcaaatccaag 184
Query: 121 aacttcaggaatggtgctgtggtagcaaagtatggtgacaagagtgtgtactttgatttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aacttcaggaatggtgctgtggtagcaaagtatggtgacaagagtgtgtactttgatttg 244
Query: 181 gaggatattggtaacactacaggacagtgggacttgtatggttcagatgcaccttcacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gaggatattggtaacactacaggacagtgggacttgtatggttcagatgcaccttcacct 304
Query: 241 tacaactctcttcagagcaagttctttgagacatttgctgctccattcacaaagagggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tacaactctcttcagagcaagttctttgagacatttgctgctccattcacaaagagggga 364
Query: 301 ttgttgctcaagtttctgatcttgggaggtggttccaccctcgcatactacagtgccaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttgttgctcaagtttctgatcttgggaggtggttccaccctcgcatactacagtgccaca 424
Query: 361 gcttctggtgacattctaccaatcaagaagggccctcaacttccaccaaagctcggtcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gcttctggtgacattctaccaatcaagaagggccctcaacttccaccaaagctcggtcct 484
Query: 421 cgtggcaagatctaa 435
|||||||||||||||
Sbjct: 485 cgtggcaagatctaa 499
>gnl|LJGI|DC598427 homologue to UniRef100_Q06H28 Cluster: Photosystem I psaH protein;
n=1; Arachis hypogaea|Rep: Photosystem I psaH protein -
Arachis hypogaea (Peanut), partial (54%)
Length = 585
Score = 484 bits (244), Expect = e-136
Identities = 254/256 (99%), Gaps = 1/256 (0%)
Strand = Plus / Plus
Query: 1 atggcttctcttgctacct-tagctgctgttcaaccagctgcaatcaatggtcttgctgg 59
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 atggcttctcttgctacctatagctgctgttcaaccagctgcaatcaatggtcttgctgg 98
Query: 60 aagttcccttaatggaactaagctctccttcaagtcctctcgccagagcatcaaatccaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 aagttcccttaatggaactaagctctccttcaagtcctctcgccagagcatcaaatccaa 158
Query: 120 gaacttcaggaatggtgctgtggtagcaaagtatggtgacaagagtgtgtactttgattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gaacttcaggaatggtgctgtggtagcaaagtatggtgacaagagtgtgtactttgattt 218
Query: 180 ggaggatattggtaacactacaggacagtgggacttgtatggttcagatgcaccttcacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggaggatattggtaacactacaggacagtgggacttgtatggttcagatgcaccttcacc 278
Query: 240 ttacaactctcttcag 255
|||||||| |||||||
Sbjct: 279 ttacaactgtcttcag 294
>gnl|LJGI|AV780313 homologue to UniRef100_Q06H28 Cluster: Photosystem I psaH protein;
n=1; Arachis hypogaea|Rep: Photosystem I psaH protein -
Arachis hypogaea (Peanut), partial (42%)
Length = 536
Score = 339 bits (171), Expect = 9e-93
Identities = 180/183 (98%)
Strand = Plus / Minus
Query: 253 cagagcaagttctttgagacatttgctgctccattcacaaagaggggattgttgctcaag 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cagagcaagttctttgagacatttgctgctccattcacaaagaggggattgttgctcaag 215
Query: 313 tttctgatcttgggaggtggttccaccctcgcatactacagtgccacagcttctggtgac 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tttctgatcttgggaggtggttccaccctcgcatactacagtgccacagcttctggtgac 155
Query: 373 attctaccaatcaagaagggccctcaacttccaccaaagctcggtcctcgtggcaagatc 432
|||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 154 attctaccaatccagaagggccctccacttccacccaagctcggtcctcgtggcaagatc 95
Query: 433 taa 435
|||
Sbjct: 94 taa 92