Miyakogusa Predicted Gene

Lj0g3v0300059.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0300059.1 Non Chatacterized Hit- tr|K4BBP6|K4BBP6_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,50,0.00000000000004,no description,Paired amphipathic helix;
PAH,Paired amphipathic helix; SIN3B-RELATED,NULL; PAH2
doma,CUFF.20313.1
         (516 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|DC599945 similar to UniRef100_A7Q2L0 Cluster: Chromosom...   182   1e-45
gnl|LJGI|BW595794 similar to UniRef100_A7PMK0 Cluster: Chromosom...    70   1e-11

>gnl|LJGI|DC599945 similar to UniRef100_A7Q2L0 Cluster: Chromosome chr1 scaffold_46,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr1 scaffold_46, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (6%)
          Length = 556

 Score =  182 bits (92), Expect = 1e-45
 Identities = 170/196 (86%)
 Strand = Plus / Plus

                                                                       
Query: 14  gtggtcagaaactgactaccaatgatgccttatcatatctcaaggcagtgaaggatatgt 73
           |||||||||||||||| || |||||||||||| |||||||||||||||| ||||| ||||
Sbjct: 361 gtggtcagaaactgaccacaaatgatgccttagcatatctcaaggcagtaaaggaaatgt 420

                                                                       
Query: 74  ttgaggatgacaaggacatgtatgatgagtttttggaggtcatgaaggatttcaaggccc 133
           || | ||| | | ||| | ||||||||| |||||||| || ||||||||||||||||| |
Sbjct: 421 ttcaagataatagggaaaagtatgatgactttttggaagttatgaaggatttcaaggctc 480

                                                                       
Query: 134 aaagaattgatactgtaggtgttatagcaagagtgaaggaactgtttgaagggcatagag 193
           |||||||||||||   |||||| ||||||||||||||||| || ||| ||||||||| ||
Sbjct: 481 aaagaattgatacaacaggtgtcatagcaagagtgaaggatctctttaaagggcataaag 540

                           
Query: 194 atctgatattgggatt 209
           |||| || ||||||||
Sbjct: 541 atctaattttgggatt 556


>gnl|LJGI|BW595794 similar to UniRef100_A7PMK0 Cluster: Chromosome chr14 scaffold_21,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_21, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (9%)
          Length = 434

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 281 ctgttgaatttgaagaagctataagttttgtgaacaagataaa 323
           |||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 205 ctgttgaatttgaagaagctattagttttgtcaacaagataaa 247



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                       
Query: 109 gaggtcatgaaggatttcaaggcccaaagaattgatactgtaggtgttatagcaagagtg 168
           ||||||||||| ||||||||||||||||| | ||| ||||  ||||| |||||||| |||
Sbjct: 37  gaggtcatgaaagatttcaaggcccaaaggactgacactgctggtgtcatagcaagggtg 96

                
Query: 169 aagga 173
           |||||
Sbjct: 97  aagga 101