Miyakogusa Predicted Gene

Lj0g3v0298859.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0298859.1 Non Chatacterized Hit- tr|I1NRF5|I1NRF5_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,42.74,6e-19,seg,NULL; RINGv,Zinc finger, RING-CH-type;
ZF_RING_CH,Zinc finger, RING-CH-type; GB DEF:
HYPOTHETICA,NODE_54933_length_1200_cov_73.122498.path1.1
         (666 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|FS316307 similar to UniRef100_A7PIE0 Cluster: Chromosom...   946   0.0  

>gnl|LJGI|FS316307 similar to UniRef100_A7PIE0 Cluster: Chromosome chr13 scaffold_17,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr13 scaffold_17, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (39%)
          Length = 737

 Score =  946 bits (477), Expect = 0.0
 Identities = 477/477 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgctcaatgaggatgaaaagttgcatcatgttgctgttgatatagacaatggcggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctgctcaatgaggatgaaaagttgcatcatgttgctgttgatatagacaatggcggt 320

                                                                       
Query: 61  ggtcaccggagctctgaagggtgttccggcgaccgggaggaggaggagcgaagggggtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcaccggagctctgaagggtgttccggcgaccgggaggaggaggagcgaagggggtgt 380

                                                                       
Query: 121 tctgatggttctggtgctgagattgtgggagtgtgtgaaaaggagagaggaagaggatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgatggttctggtgctgagattgtgggagtgtgtgaaaaggagagaggaagaggatcc 440

                                                                       
Query: 181 tctgcttcagattcagagtgttctgtggaggtggtggatctggaaggtggtggagaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgcttcagattcagagtgttctgtggaggtggtggatctggaaggtggtggagaggaa 500

                                                                       
Query: 241 gtcacagatgggaaggtgcatttggctaaggtggagagggattgcaggatttgccatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcacagatgggaaggtgcatttggctaaggtggagagggattgcaggatttgccatctc 560

                                                                       
Query: 301 agcatggatatgagtatgagcaatcaggaatctggtactcccattgagctggggtgttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcatggatatgagtatgagcaatcaggaatctggtactcccattgagctggggtgttct 620

                                                                       
Query: 361 tgcaaggatgatttggctgctgctcacaaacagtgtgctgaggcttggttcaagatcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaaggatgatttggctgctgctcacaaacagtgtgctgaggcttggttcaagatcaag 680

                                                                    
Query: 421 ggtaacaaaacttgtgaaatctgtggatcaattgcacacaatgtagctggcgctatt 477
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtaacaaaacttgtgaaatctgtggatcaattgcacacaatgtagctggcgctatt 737