Miyakogusa Predicted Gene
- Lj0g3v0298839.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0298839.1 Non Chatacterized Hit- tr|I3SY08|I3SY08_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,100,6e-37,no
description,NULL; Sm-like ribonucleoproteins,Like-Sm (LSM) domain;
snRNP Sm proteins,Ribonucleopr,CUFF.20069.1
(234 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76058 448 e-126
gnl|LJGI|TC78822 434 e-121
gnl|LJGI|TC69363 359 5e-99
gnl|LJGI|BW600304 313 3e-85
>gnl|LJGI|TC76058
Length = 793
Score = 448 bits (226), Expect = e-126
Identities = 232/234 (99%)
Strand = Plus / Plus
Query: 1 atggcgactataccagttaatcccaagcctttcctgaacaatttgactgggaaaccagtt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57 atggcgactataccagtcaatcccaagcctttcctgaacaatttgactgggaaaccagtt 116
Query: 61 attgtgaaacttaagtggggaatggagtacaagggatatcttgtttcagttgattcctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 attgtgaaacttaagtggggaatggagtacaagggatatcttgtttcagttgattcctat 176
Query: 121 atgaacttgcagctggccaacactgaagagtacattgagggacagtttactggaaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 atgaacttgcagctggccaacactgaagagtacattgagggacagtttactggaaattta 236
Query: 181 ggagagatattaatcagatgcaacaatgtcctctaccttcgtggagtaccagaa 234
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggagaaatattaatcagatgcaacaatgtcctctaccttcgtggagtaccagaa 290
>gnl|LJGI|TC78822
Length = 559
Score = 434 bits (219), Expect = e-121
Identities = 232/235 (98%), Gaps = 1/235 (0%)
Strand = Plus / Plus
Query: 1 atggcgactataccagttaatcccaagcctttcctgaacaatttgactgggaaaccagtt 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 atggcgactataccagtcaatcccaagcctttcctgaacaatttgactgggaaaccagtt 200
Query: 61 attgtgaaacttaagtggggaatggagtacaagggatatcttgtttcagttgattcctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgtgaaacttaagtggggaatggagtacaagggatatcttgtttcagttgattcctat 260
Query: 121 atgaacttgcagctggccaacactgaagagtacattgagggacagtttactggaaattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaacttgcagctggccaacactgaagagtacattgagggacagtttactggaaattta 320
Query: 181 ggagagatattaatc-agatgcaacaatgtcctctaccttcgtggagtaccagaa 234
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagaaatattaatcaagatgcaacaatgtcctctaccttcgtggagtaccagaa 375
>gnl|LJGI|TC69363
Length = 567
Score = 359 bits (181), Expect = 5e-99
Identities = 220/233 (94%)
Strand = Plus / Plus
Query: 1 atggcgactataccagttaatcccaagcctttcctgaacaatttgactgggaaaccagtt 60
|||||||||||||| |||||||| ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 96 atggcgactatacctgttaatccaaagccattcttgaacaatttgactgggaagccagtt 155
Query: 61 attgtgaaacttaagtggggaatggagtacaagggatatcttgtttcagttgattcctat 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 156 attgtcaaactcaagtggggaatggagtacaagggatatcttgtttcagttgactcctac 215
Query: 121 atgaacttgcagctggccaacactgaagagtacattgagggacagtttactggaaattta 180
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 216 atgaacttgcggctggccaacactgaagagtacattgagggtcagtttactggaaattta 275
Query: 181 ggagagatattaatcagatgcaacaatgtcctctaccttcgtggagtaccaga 233
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 276 ggagagattttaatcagatgcaacaacgtcctctaccttcgtggagtaccaga 328
>gnl|LJGI|BW600304
Length = 411
Score = 313 bits (158), Expect = 3e-85
Identities = 161/162 (99%)
Strand = Plus / Plus
Query: 73 aagtggggaatggagtacaagggatatcttgtttcagttgattcctatatgaacttgcag 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 aagtggggaatggagtacaagggatatcttgtttcagttgattcctatatgaacttgcag 95
Query: 133 ctggccaacactgaagagtacattgagggacagtttactggaaatttaggagagatatta 192
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 96 ctggccaacactgaagagtacattgagggacagtttactggaaatttaggagaaatatta 155
Query: 193 atcagatgcaacaatgtcctctaccttcgtggagtaccagaa 234
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 atcagatgcaacaatgtcctctaccttcgtggagtaccagaa 197