Miyakogusa Predicted Gene
- Lj0g3v0297619.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0297619.1 tr|Q6V0J6|Q6V0J6_BRACM Reduced vernalization
response 1 OS=Brassica campestris PE=2
SV=1,59.34,4e-18,seg,NULL,gene.g23149.t1.1
(825 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC74089 similar to UniRef100_Q6R2U8 Cluster: Reduced ve... 1390 0.0
gnl|LJGI|TC80144 similar to UniRef100_Q9LJ67 Cluster: Gb|AAD4315... 135 5e-31
>gnl|LJGI|TC74089 similar to UniRef100_Q6R2U8 Cluster: Reduced vernalization response
1; n=1; Brassica rapa|Rep: Reduced vernalization response
1 - Brassica campestris (Field mustard), partial (43%)
Length = 1722
Score = 1390 bits (701), Expect = 0.0
Identities = 704/705 (99%)
Strand = Plus / Plus
Query: 1 atgtatgaagggaattcatctttcattgttcatattttcaatatgagcacttctgaggtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 atgtatgaagggaattcatctttcattgttcatattttcaatatgagcacttctgaggtg 471
Query: 61 aattatcagtctgcagtgagaagccgtaatgaagggcctgtctttacgaattatcatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aattatcagtctgcagtgagaagccgtaatgaagggcctgtctttacgaattatcatcat 531
Query: 121 atttttgtcgaaatggaagatacagactccttcgaattcatggattcctctccttcaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atttttgtcgaaatggaagatacagactccttcgaattcatggattcctctccttcaaac 591
Query: 181 cttactcctggttcattgcaaaacaaggtttttggtggatctgtagatcaactgacacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cttactcctggttcattgcaaaacaaggtttttggtggatctgtagatcaactgacacct 651
Query: 241 gggaagaatcaatctcctgcacggcagaatttgtttaatggtgggtctaaactcaatcgt 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 652 gggaagaatcaatctcctgcactgcagaatttgtttaatggtgggtctaaactcaatcgt 711
Query: 301 gtgaactggggagatagtgggagtccttttccttcaaaggatgccaattcacagggcaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gtgaactggggagatagtgggagtccttttccttcaaaggatgccaattcacagggcaat 771
Query: 361 cactcaaccagagatataggtgttcagtttaatgctgttgaatttaaaaggtctactgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cactcaaccagagatataggtgttcagtttaatgctgttgaatttaaaaggtctactgaa 831
Query: 421 gaattgaaattgcgttatcctaacaatgaggaaggggttagcaaaactgtgaaaaggaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattgaaattgcgttatcctaacaatgaggaaggggttagcaaaactgtgaaaaggaag 891
Query: 481 aggaagtctgaaccaaaaactgtagatggtcaggaaccttctgctgaaaatgaagaggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aggaagtctgaaccaaaaactgtagatggtcaggaaccttctgctgaaaatgaagaggag 951
Query: 541 gcagaaatgcgctatagattttatgaaagtgcttctgctagaaagagaaccgtgactgcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gcagaaatgcgctatagattttatgaaagtgcttctgctagaaagagaaccgtgactgcg 1011
Query: 601 gaggaaagagagagggcaattaatgatgcgaaagcatttgaaccagctaatcctttctgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 gaggaaagagagagggcaattaatgatgcgaaagcatttgaaccagctaatcctttctgt 1071
Query: 661 cgagttgtccttcgaccctcctatttatataggggatgcataatg 705
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 cgagttgtccttcgaccctcctatttatataggggatgcataatg 1116
>gnl|LJGI|TC80144 similar to UniRef100_Q9LJ67 Cluster: Gb|AAD43153.1; n=1;
Arabidopsis thaliana|Rep: Gb|AAD43153.1 - Arabidopsis
thaliana (Mouse-ear cress), partial (57%)
Length = 897
Score = 135 bits (68), Expect = 5e-31
Identities = 146/172 (84%)
Strand = Plus / Plus
Query: 530 atgaagaggaggcagaaatgcgctatagattttatgaaagtgcttctgctagaaagagaa 589
|||||||||||| |||||||||| ||||||||| |||||||||||||| ||||| ||||
Sbjct: 136 atgaagaggaggtagaaatgcgcgttagattttacgaaagtgcttctgcaagaaaaagaa 195
Query: 590 ccgtgactgcggaggaaagagagagggcaattaatgatgcgaaagcatttgaaccagcta 649
| ||||| || || |||||||| | ||| | |||| || |||| ||||||||| |||
Sbjct: 196 ctgtgacagctgaagaaagagaaaaggccgtcaatgcagcaaaagagtttgaaccaccta 255
Query: 650 atcctttctgtcgagttgtccttcgaccctcctatttatataggggatgcat 701
||||||||||||| |||||||| || |||||||||||||| || ||||||||
Sbjct: 256 atcctttctgtcgggttgtcctgcggccctcctatttatacagaggatgcat 307
Score = 75.8 bits (38), Expect = 4e-13
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 373 gatataggtgttcagtttaatgctgttgaatttaaaaggtctactgaagaattgaaattg 432
||||||||||| ||||||||||| | ||| ||||||||||||| ||||||| ||||||||
Sbjct: 9 gatataggtgtccagtttaatgcagctgagtttaaaaggtctaatgaagaagtgaaattg 68
Query: 433 cg 434
||
Sbjct: 69 cg 70