Miyakogusa Predicted Gene
- Lj0g3v0296609.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0296609.1 Non Chatacterized Hit- tr|K4BHJ8|K4BHJ8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.56,3e-19,zf-C3HC4_3,NULL; ZF_RING_2,Zinc finger, RING-type;
no description,Zinc finger, RING/FYVE/PHD-type; I,TC79563.path1.1
(306 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC79563 similar to UniRef100_A7PHV4 Cluster: Chromosome... 539 e-153
gnl|LJGI|TC70962 homologue to UniRef100_A7PHV4 Cluster: Chromoso... 76 1e-13
>gnl|LJGI|TC79563 similar to UniRef100_A7PHV4 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 505
Score = 539 bits (272), Expect = e-153
Identities = 297/306 (97%)
Strand = Plus / Plus
Query: 1 atggatatgcaacttgagttgcagcgctcaataagacaagaagtttctgcagctctcaat 60
|||||||||| |||||||||||||||||| ||||||| |||||||||| |||||||||||
Sbjct: 6 atggatatgccacttgagttgcagcgctcnataagaccagaagtttctncagctctcaat 65
Query: 61 cgctcagctggttcatcaggaacacatgactgtgagtcaccggatggaaaatcgaagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cgctcagctggttcatcaggaacacatgactgtgagtcaccggatggaaaatcgaagtgg 125
Query: 121 gaatgtgtgagaaaaggactttgctgtgtttgctgcgaaagcaatattgattctttgttg 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 126 gaatgtgtgagaaaaggactttgctgtgtttgctgcgaaagccatattgattctttgttg 185
Query: 181 tacagatgtgggcacttgtgtacatgttcaaaatgtgctaatgagttgcttcaaaatgga 240
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 186 tacagatgtgggcacttgtgtacatgttccaaatgtgctaatgagttgcttccaaatgga 245
Query: 241 aggaaatgccctatgtgtcaagcgcctgtggtggaggtgatacgtgcttattctattcaa 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 246 aggaaatgccctatgtgtccagcgcctgtggtggaggtgatacgtgcttattctattcca 305
Query: 301 taatcg 306
||||||
Sbjct: 306 taatcg 311
>gnl|LJGI|TC70962 homologue to UniRef100_A7PHV4 Cluster: Chromosome chr13
scaffold_17, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr13 scaffold_17, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (13%)
Length = 553
Score = 75.8 bits (38), Expect = 1e-13
Identities = 86/102 (84%)
Strand = Plus / Plus
Query: 126 tgtgagaaaaggactttgctgtgtttgctgcgaaagcaatattgattctttgttgtacag 185
||||| ||||||| |||||||||||| || || ||| |||||||||| | ||||||||
Sbjct: 159 tgtgaaaaaaggaacttgctgtgtttgttgtgatagccatattgattcgcttttgtacag 218
Query: 186 atgtgggcacttgtgtacatgttcaaaatgtgctaatgagtt 227
||| || ||| |||| || |||||||||||||| ||||||||
Sbjct: 219 atgcggacacatgtgcacgtgttcaaaatgtgccaatgagtt 260
Score = 63.9 bits (32), Expect = 5e-10
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1 atggatatgcaacttgagttgcagcgctcaataagacaagaagtttctgcagctctcaat 60
||||| |||||||| ||||||||||| || ||||||| || || ||||||||||| ||
Sbjct: 37 atggacatgcaactggagttgcagcgttctgtaagacaggaggtctctgcagctcttaac 96
Query: 61 cgctcagctggt 72
||||||||||||
Sbjct: 97 cgctcagctggt 108