Miyakogusa Predicted Gene
- Lj0g3v0296239.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0296239.1 tr|Q20563|Q20563_CAEEL Protein TAF-11.1
OS=Caenorhabditis elegans GN=taf-11.1 PE=2
SV=1,40.16,3e-19,Histone-fold,Histone-fold; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,TAFII28-like protein; TAFII28,,CUFF.19850.1
(549 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76251 similar to UniRef100_A7QK63 Cluster: Chromosome... 809 0.0
gnl|LJGI|DC595895 similar to UniRef100_A7QK63 Cluster: Chromosom... 222 2e-57
gnl|LJGI|TC78047 similar to UniRef100_Q0JKE2 Cluster: Os01g06804... 206 1e-52
>gnl|LJGI|TC76251 similar to UniRef100_A7QK63 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (78%)
Length = 1223
Score = 809 bits (408), Expect = 0.0
Identities = 455/472 (96%), Gaps = 9/472 (1%)
Strand = Plus / Plus
Query: 87 cgggaaaaagccgagtaaaacaggcacaggcacaagtgg---------tggtggcaagaa 137
||||||||||| ||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 371 cgggaaaaagctgagtaaaacaggcaccggcacaagtggtagtggtggtggtggcaagaa 430
Query: 138 taaagatgatgatgaggaagaggaggaggacaacatggatgttgagcttaccaagctcca 197
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 taaagatgacgaggaggaagaggaggaggacaacatggatgttgagcttaccaagctcca 490
Query: 198 gcccaccggtgacccccaaaaaatggccaagatgcaggctattttgtcacaattcactga 257
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcccactggtgacccccaaaaaatggccaagatgcaggctattttgtcacaattcactga 550
Query: 258 agaacagatgagcagatatgagtcttttaggagggctggattccagaaagctaacatgaa 317
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 551 agaacagatgagcagatatgagtcttttagaagggctggattccagaaagctaacatgaa 610
Query: 318 aaggttattagcaagcatcactgggacccagaaaattactataccaataacaattgtagt 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aaggttattagcaagcatcactgggacccagaaaattactataccaataacaattgtagt 670
Query: 378 atcagggattgcaaaaatgtttgttggtgaagttgtggaaacagctagaatagttatcaa 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atcagggattgcaaaaatgtttgttggtgaagttgtggaaacagctagaatagttatcaa 730
Query: 438 agagaggaaggaatctggacctatccggccatgtcatctgagagaagcatatagacgact 497
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 731 agagaggaaggaatctggaccaatccggccttgtcatctgagagaagcatatagacgact 790
Query: 498 aaagcttgaagggaaagtctttaagagatcagtccctaggcttttccggtaa 549
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 aaagcttgaagggaaagtctttaagagatcagtccctaggcttttccggtaa 842
Score = 123 bits (62), Expect = 1e-27
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 atgaagcaatcaaaggatccattcgaagctgcatttgtggaatcaccacctgaatcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 atgaagcaatcaaaggatccattcgaagctgcatttgtggaatcaccacctgaatcccct 284
Query: 61 gt 62
||
Sbjct: 285 gt 286
>gnl|LJGI|DC595895 similar to UniRef100_A7QK63 Cluster: Chromosome chr19 scaffold_111,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr19 scaffold_111, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (18%)
Length = 516
Score = 222 bits (112), Expect = 2e-57
Identities = 147/156 (94%), Gaps = 2/156 (1%)
Strand = Plus / Plus
Query: 63 ccaagctcaggaagacgatggtctcgggaaaaagccgagtaaaacaggcacaggcacaag 122
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 351 ccaagctcaggaagactatggtctcgggaaaaagccgagtaaaacaggcccaggcacaag 410
Query: 123 tggtggtggcaagaataaagatgatgatgaggaagaggaggaggacaacatggatgttga 182
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 411 tggtggtggcaagaataaagatgatgatgaggaagaggaggagggacacatggatgttga 470
Query: 183 gcttaccaagctccagcccaccggtgacccccaaaa 218
||||||| ||||||||| || ||||||||||||||
Sbjct: 471 gcttacc-agctccagcgca-gggtgacccccaaaa 504
Score = 123 bits (62), Expect = 1e-27
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 1 atgaagcaatcaaaggatccattcgaagctgcatttgtggaatcaccacctgaatcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atgaagcaatcaaaggatccattcgaagctgcatttgtggaatcaccacctgaatcccct 279
Query: 61 gt 62
||
Sbjct: 280 gt 281
>gnl|LJGI|TC78047 similar to UniRef100_Q0JKE2 Cluster: Os01g0680400 protein; n=2;
Oryza sativa Japonica Group|Rep: Os01g0680400 protein -
Oryza sativa subsp. japonica (Rice), partial (17%)
Length = 399
Score = 206 bits (104), Expect = 1e-52
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 446 aggaatctggacctatccggccatgtcatctgagagaagcatatagacgactaaagcttg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 aggaatctggacctatccggccatgtcatctgagagaagcatatagacgactaaagcttg 79
Query: 506 aagggaaagtctttaagagatcagtccctaggcttttccggtaa 549
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 aagggaaagtctttaagagatcagtccctaggcttttccggtaa 123