Miyakogusa Predicted Gene
- Lj0g3v0294399.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0294399.1 tr|Q6J724|Q6J724_RAT BRCA1-associated RING domain
protein 1 beta isoform OS=Rattus norvegicus
GN=Bar,29.41,3e-18,ZF_RING_1,Zinc finger, RING-type, conserved site;
BRCT,BRCT domain; zf-HC5HC2H,NULL;
zf-C3HC4_2,NULL,NODE_60048_length_2303_cov_14.995224.path1.1
(2127 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS329050 similar to UniRef100_Q3E7F4 Cluster: Uncharact... 1352 0.0
gnl|LJGI|FS355360 weakly similar to UniRef100_Q3E7F4 Cluster: Un... 918 0.0
gnl|LJGI|BP060014 weakly similar to UniRef100_A7Q1N8 Cluster: Ch... 666 0.0
>gnl|LJGI|FS329050 similar to UniRef100_Q3E7F4 Cluster: Uncharacterized protein
At1g04020.2; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At1g04020.2 - Arabidopsis
thaliana (Mouse-ear cress), partial (8%)
Length = 738
Score = 1352 bits (682), Expect = 0.0
Identities = 685/686 (99%)
Strand = Plus / Plus
Query: 1 atggaagattctggaaaaccgaacaacaagagcaaactcatgaatccatggatgctccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 atggaagattctggaaaaccgaacaacaagagcaaactcatgaatccatggatgctccac 112
Query: 61 ttccagaaactcgctctcgaactcaaatgccctctctgtttgagcttgttcgagaagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttccagaaactcgctctcgaactcaaatgccctctctgtttgagcttgttcgagaagcca 172
Query: 121 gtgttgctaccgtgtgaccacttgttctgcgattcctgcttggttgatagctccctttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gtgttgctaccgtgtgaccacttgttctgcgattcctgcttggttgatagctccctttct 232
Query: 181 ggctctgaatgtgctgtttgcaaaactaagtatgctcaaacagatataagaaatgtgccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ggctctgaatgtgctgtttgcaaaactaagtatgctcaaacagatataagaaatgtgccg 292
Query: 241 tttgtggaaaatatggtagcgatctatagaagcttggatgcatctttttgtgctagtatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tttgtggaaaatatggtagcgatctatagaagcttggatgcatctttttgtgctagtatg 352
Query: 301 ttgcagcaacgctctaatgatgattctagggttttgcagcaatgccagacatttcgcgat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttgcagcaacgctctaatgatgattctagggttttgcagcaatgccagacatttcgcgat 412
Query: 361 tcaagctatagtaatattaagaaggctgataatttttcacaaagttcacccaattctaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tcaagctatagtaatattaagaaggctgataatttttcacaaagttcacccaattctaat 472
Query: 421 gggtttggggttggtgagaatcgcaaatctatgattacaatgcatgttaaaccagaggag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gggtttggggttggtgagaatcgcaaatctatgattacaatgcatgttaaaccagaggag 532
Query: 481 cttgagatgtctagtgggggaagagctggctttcgtaatgatgtaaagccttatccaatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cttgagatgtctagtgggggaagagctggctttcgtaatgatgtaaagccttatccaatg 592
Query: 541 caacgctcccgggttgaaattggggactatgtggaaatggatgtgaatcaagtgacacaa 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 593 caacgctcccgggttgaaattggggaccatgtggaaatggatgtgaatcaagtgacacaa 652
Query: 601 gctgcagtctacagccctccattttgtgataccaaaggttcggataatgactgcagcgaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gctgcagtctacagccctccattttgtgataccaaaggttcggataatgactgcagcgaa 712
Query: 661 ctagacagtgatcatccattcaatcc 686
||||||||||||||||||||||||||
Sbjct: 713 ctagacagtgatcatccattcaatcc 738
>gnl|LJGI|FS355360 weakly similar to UniRef100_Q3E7F4 Cluster: Uncharacterized protein
At1g04020.2; n=1; Arabidopsis thaliana|Rep:
Uncharacterized protein At1g04020.2 - Arabidopsis
thaliana (Mouse-ear cress), partial (12%)
Length = 658
Score = 918 bits (463), Expect = 0.0
Identities = 472/475 (99%)
Strand = Plus / Minus
Query: 1653 gaaaattgattggatcaaagcatgcatgaaagtgatgagtcttgtcgaagaagaaccata 1712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaaaattgattggatcaaagcatgcatgaaagtgatgagtcttgtcgaagaagaaccata 599
Query: 1713 tgaaattagtcttgacaaccaagggtgtaatggtggcccaaaagctggcagacttagtgc 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgaaattagtcttgacaaccaagggtgtaatggtggcccaaaagctggcagacttagtgc 539
Query: 1773 tctggccaatgagccaaagctatttagtggcttaaagttttacttctctggtgattatgt 1832
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 538 tttggccaatgagccaaagctatttagtggcttaaagttttacttctctggggattatgt 479
Query: 1833 gtcgagttataaggaagatcttgaagatttagttgaagtgggaggaggtgcggttttgac 1892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gtcgagttataaggaagatcttgaagatttagttgaagtgggaggaggtgcggttttgac 419
Query: 1893 aagcaaggataaattagaagctaaaagacatgaatttgaagtgacttcaaatttgctgat 1952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aagcaaggataaattagaagctaaaagacatgaatttgaagtgacttcaaatttgctgat 359
Query: 1953 tgtttacaatcttgatccgccacaaggaagtaaattgggggatgaagtttcaactctttg 2012
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtttacaatcttgatccgccccaaggaagtaaattgggggatgaagtttcaactctttg 299
Query: 2013 gcagagactaaatgaggctgaagatctagctgccaatactggttcccaagtcattggaca 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gcagagactaaatgaggctgaagatctagctgccaatactggttcccaagtcattggaca 239
Query: 2073 cacatggattctggagtcaattgctgcgtgtaagttgcagccttttatttgctaa 2127
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 cacatggattctggagtcaattgctgcgtgtaagttgcagccttttatttgctaa 184
>gnl|LJGI|BP060014 weakly similar to UniRef100_A7Q1N8 Cluster: Chromosome chr7
scaffold_44, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr7 scaffold_44, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (24%)
Length = 366
Score = 666 bits (336), Expect = 0.0
Identities = 350/352 (99%), Gaps = 2/352 (0%)
Strand = Plus / Plus
Query: 958 ttgaatccaagtacaagtatctgttcgttttgccaatcctccgaaacttcagaggctact 1017
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 17 ttgaatccaagtacaagtatctgttcgttt-gccaatcctccgaaacttcagaggctac- 74
Query: 1018 ggacccatgcttcattatgcaaatggaaagtcagttataggagatgctgcaatgcaaccg 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 ggacccatgcttcattatgcaaatggaaagtcagttataggagatgctgcaatgcaaccg 134
Query: 1078 aatgtcatacacgtgcatagatgctgtgttgactgggcaccacaagtgtattttgttgat 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 aatgtcatacacgtgcatagatgctgtgttgactgggcaccacaagtgtattttgttgat 194
Query: 1138 gaaacttgtaagaacttgaaggcagaagtggcaaggggagcaaagctgaaatgcagcaca 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 gaaacttgtaagaacttgaaggcagaagtggcaaggggagcaaagctgaaatgcagcaca 254
Query: 1198 tgtggtctaaaaggagctgctcttggctgctatgtcaaatcatgtaaaagaacttatcat 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtggtctaaaaggagctgctcttggctgctatgtcaaatcatgtaaaagaacttatcat 314
Query: 1258 gttccttgtgcaatggatgtttcaacttgccgctgggatcaagagaagtatc 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gttccttgtgcaatggatgtttcaacttgccgctgggatcaagagaagtatc 366