Miyakogusa Predicted Gene

Lj0g3v0292029.2
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0292029.2 Non Chatacterized Hit- tr|C0PB35|C0PB35_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,65.15,8e-17,TRANSCRIPTION ELONGATION FACTOR-RELATED,NULL;
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3,NULL; ,CUFF.19515.2
         (582 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC60127 similar to UniRef100_A7Q7A6 Cluster: Chromosome...  1154   0.0  
gnl|LJGI|TC69524 similar to UniRef100_Q53PV2 Cluster: AT5g09850/...   353   8e-97
gnl|LJGI|TC76407 similar to UniRef100_A7Q7A6 Cluster: Chromosome...   155   4e-37
gnl|LJGI|CB828469 similar to UniRef100_A7Q7A6 Cluster: Chromosom...   137   9e-32
gnl|LJGI|BP043507                                                     137   9e-32
gnl|LJGI|TC71171 similar to UniRef100_Q9FIC1 Cluster: Gb|AAF1956...   115   3e-25

>gnl|LJGI|TC60127 similar to UniRef100_A7Q7A6 Cluster: Chromosome chr18 scaffold_59,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_59, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (54%)
          Length = 888

 Score = 1154 bits (582), Expect = 0.0
 Identities = 582/582 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtttg 64

                                                                       
Query: 61  cggaagcattcgtccaatgaagttaggagattggtcaagctacttgtcaggaagtggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  cggaagcattcgtccaatgaagttaggagattggtcaagctacttgtcaggaagtggaag 124

                                                                       
Query: 121 gaacttgtagatgaatgggtgaagttcaagacaccgggagaagcggcggccacatctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gaacttgtagatgaatgggtgaagttcaagacaccgggagaagcggcggccacatctgtt 184

                                                                       
Query: 181 atgggtgatgaagactcacctcagcagaaaaccccacaaaacgggtatcatcagattcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atgggtgatgaagactcacctcagcagaaaaccccacaaaacgggtatcatcagattcct 244

                                                                       
Query: 241 gatttttcatgctcgccaaatccacacaatggtagttttgggttggagggcaacaatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gatttttcatgctcgccaaatccacacaatggtagttttgggttggagggcaacaatagt 304

                                                                       
Query: 301 gtagctgaaccaaagccgaaagcaattccacgcaaagaagcgcgcccaaaaccggcacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtagctgaaccaaagccgaaagcaattccacgcaaagaagcgcgcccaaaaccggcacca 364

                                                                       
Query: 361 tcaccaccatcagtcccaactcctcaaaatagacagagagaacagagagataataatctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcaccaccatcagtcccaactcctcaaaatagacagagagaacagagagataataatctg 424

                                                                       
Query: 421 gaagcggagagacttgcttcagcaagaaagaggcttcaagagaactacaaagaggctgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaagcggagagacttgcttcagcaagaaagaggcttcaagagaactacaaagaggctgca 484

                                                                       
Query: 481 aatgccaaaaagcaaagaacaattcaggtgatggacctccatgagttgccaaagccaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aatgccaaaaagcaaagaacaattcaggtgatggacctccatgagttgccaaagccaaag 544

                                                     
Query: 541 aataagaataccttctttgcaaagaacaaaggcggcgccggt 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aataagaataccttctttgcaaagaacaaaggcggcgccggt 586


>gnl|LJGI|TC69524 similar to UniRef100_Q53PV2 Cluster: AT5g09850/MYH9_6; n=2; Oryza
           sativa Japonica Group|Rep: AT5g09850/MYH9_6 - Oryza
           sativa subsp. japonica (Rice), partial (15%)
          Length = 561

 Score =  353 bits (178), Expect = 8e-97
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                       
Query: 405 gagagataataatctggaagcggagagacttgcttcagcaagaaagaggcttcaagagaa 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gagagataataatctggaagcggagagacttgcttcagcaagaaagaggcttcaagagaa 61

                                                                       
Query: 465 ctacaaagaggctgcaaatgccaaaaagcaaagaacaattcaggtgatggacctccatga 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  ctacaaagaggctgcaaatgccaaaaagcaaagaacaattcaggtgatggacctccatga 121

                                                                     
Query: 525 gttgccaaagccaaagaataagaataccttctttgcaaagaacaaaggcggcgccggt 582
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gttgccaaagccaaagaataagaataccttctttgcaaagaacaaaggcggcgccggt 179


>gnl|LJGI|TC76407 similar to UniRef100_A7Q7A6 Cluster: Chromosome chr18 scaffold_59,
            whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome chr18 scaffold_59, whole genome shotgun
            sequence - Vitis vinifera (Grape), partial (51%)
          Length = 1941

 Score =  155 bits (78), Expect = 4e-37
 Identities = 165/194 (85%)
 Strand = Plus / Plus

                                                                        
Query: 379  actcctcaaaatagacagagagaacagagagataataatctggaagcggagagacttgct 438
            |||||||||||||  || |||||||||||  |||  ||| | || |||||||  ||||||
Sbjct: 1144 actcctcaaaataagcaaagagaacagaggaatagcaattttgaggcggagaagcttgct 1203

                                                                        
Query: 439  tcagcaagaaagaggcttcaagagaactacaaagaggctgcaaatgccaaaaagcaaaga 498
            || ||||||||  |||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct: 1204 tcggcaagaaaacggcttcaagagaactacagagatgctgaaaatgccaaaaagcaaaga 1263

                                                                        
Query: 499  acaattcaggtgatggacctccatgagttgccaaagccaaagaataagaataccttcttt 558
            || ||||||||||||||  |||||||||| |||||| ||||    ||||| |||||||||
Sbjct: 1264 acgattcaggtgatggatatccatgagttaccaaagtcaaaatccaagaacaccttcttt 1323

                          
Query: 559  gcaaagaacaaagg 572
            | ||||||||||||
Sbjct: 1324 ggaaagaacaaagg 1337



 Score =  143 bits (72), Expect = 1e-33
 Identities = 126/144 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtttg 60
           |||||| ||||||||||||| ||| | ||  ||||||||||||||||||||||||| |||
Sbjct: 763 atggatattacattccaagcgttaaaggattctgacattgggaggcatgtgaatcggttg 822

                                                                       
Query: 61  cggaagcattcgtccaatgaagttaggagattggtcaagctacttgtcaggaagtggaag 120
           || |||||| | |||||||||||| |  ||||||| ||||||||||||||||||||||||
Sbjct: 823 cgcaagcatccttccaatgaagttcgccgattggttaagctacttgtcaggaagtggaag 882

                                   
Query: 121 gaacttgtagatgaatgggtgaag 144
           ||  |||| ||||| |||||||||
Sbjct: 883 gagattgttgatgagtgggtgaag 906


>gnl|LJGI|CB828469 similar to UniRef100_A7Q7A6 Cluster: Chromosome chr18 scaffold_59,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_59, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (26%)
          Length = 518

 Score =  137 bits (69), Expect = 9e-32
 Identities = 129/149 (86%)
 Strand = Plus / Plus

                                                                       
Query: 424 gcggagagacttgcttcagcaagaaagaggcttcaagagaactacaaagaggctgcaaat 483
           |||||||  |||||||| ||||||||  |||||||||||||||||| ||| |||| ||||
Sbjct: 331 gcggagaagcttgcttcggcaagaaaacggcttcaagagaactacagagatgctgaaaat 390

                                                                       
Query: 484 gccaaaaagcaaagaacaattcaggtgatggacctccatgagttgccaaagccaaagaat 543
           ||||||||||||||||| ||||||||||||||  |||||||||| |||||| ||||    
Sbjct: 391 gccaaaaagcaaagaacgattcaggtgatggatatccatgagttaccaaagtcaaaatcc 450

                                        
Query: 544 aagaataccttctttgcaaagaacaaagg 572
           ||||| |||||||||| ||| ||||||||
Sbjct: 451 aagaacaccttctttggaaataacaaagg 479


>gnl|LJGI|BP043507 
          Length = 442

 Score =  137 bits (69), Expect = 9e-32
 Identities = 113/128 (88%)
 Strand = Plus / Minus

                                                                       
Query: 455 ttcaagagaactacaaagaggctgcaaatgccaaaaagcaaagaacaattcaggtgatgg 514
           |||||||| ||||| ||||||||||||||||| |||||| |||||| | |||||||||||
Sbjct: 442 ttcaagagnactaccaagaggctgcaaatgcccaaaagccaagaaccaatcaggtgatgg 383

                                                                       
Query: 515 acctccatgagttgccaaagccaaagaataagaataccttctttgcaaagaacaaaggcg 574
           |||||| ||||||||| ||||| ||| ||||| ||||| ||||||| ||| || ||||||
Sbjct: 382 acctccctgagttgcccaagcccaaggataaggataccctctttgccaaggaccaaggcg 323

                   
Query: 575 gcgccggt 582
           ||||||||
Sbjct: 322 gcgccggt 315


>gnl|LJGI|TC71171 similar to UniRef100_Q9FIC1 Cluster: Gb|AAF19567.1; n=1;
           Arabidopsis thaliana|Rep: Gb|AAF19567.1 - Arabidopsis
           thaliana (Mouse-ear cress), partial (30%)
          Length = 782

 Score =  115 bits (58), Expect = 3e-25
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                     
Query: 1   atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtt 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtt 780