Miyakogusa Predicted Gene
- Lj0g3v0292029.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0292029.2 Non Chatacterized Hit- tr|C0PB35|C0PB35_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,65.15,8e-17,TRANSCRIPTION ELONGATION FACTOR-RELATED,NULL;
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3,NULL; ,CUFF.19515.2
(582 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60127 similar to UniRef100_A7Q7A6 Cluster: Chromosome... 1154 0.0
gnl|LJGI|TC69524 similar to UniRef100_Q53PV2 Cluster: AT5g09850/... 353 8e-97
gnl|LJGI|TC76407 similar to UniRef100_A7Q7A6 Cluster: Chromosome... 155 4e-37
gnl|LJGI|CB828469 similar to UniRef100_A7Q7A6 Cluster: Chromosom... 137 9e-32
gnl|LJGI|BP043507 137 9e-32
gnl|LJGI|TC71171 similar to UniRef100_Q9FIC1 Cluster: Gb|AAF1956... 115 3e-25
>gnl|LJGI|TC60127 similar to UniRef100_A7Q7A6 Cluster: Chromosome chr18 scaffold_59,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_59, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (54%)
Length = 888
Score = 1154 bits (582), Expect = 0.0
Identities = 582/582 (100%)
Strand = Plus / Plus
Query: 1 atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtttg 64
Query: 61 cggaagcattcgtccaatgaagttaggagattggtcaagctacttgtcaggaagtggaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cggaagcattcgtccaatgaagttaggagattggtcaagctacttgtcaggaagtggaag 124
Query: 121 gaacttgtagatgaatgggtgaagttcaagacaccgggagaagcggcggccacatctgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 gaacttgtagatgaatgggtgaagttcaagacaccgggagaagcggcggccacatctgtt 184
Query: 181 atgggtgatgaagactcacctcagcagaaaaccccacaaaacgggtatcatcagattcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 atgggtgatgaagactcacctcagcagaaaaccccacaaaacgggtatcatcagattcct 244
Query: 241 gatttttcatgctcgccaaatccacacaatggtagttttgggttggagggcaacaatagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gatttttcatgctcgccaaatccacacaatggtagttttgggttggagggcaacaatagt 304
Query: 301 gtagctgaaccaaagccgaaagcaattccacgcaaagaagcgcgcccaaaaccggcacca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtagctgaaccaaagccgaaagcaattccacgcaaagaagcgcgcccaaaaccggcacca 364
Query: 361 tcaccaccatcagtcccaactcctcaaaatagacagagagaacagagagataataatctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tcaccaccatcagtcccaactcctcaaaatagacagagagaacagagagataataatctg 424
Query: 421 gaagcggagagacttgcttcagcaagaaagaggcttcaagagaactacaaagaggctgca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gaagcggagagacttgcttcagcaagaaagaggcttcaagagaactacaaagaggctgca 484
Query: 481 aatgccaaaaagcaaagaacaattcaggtgatggacctccatgagttgccaaagccaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aatgccaaaaagcaaagaacaattcaggtgatggacctccatgagttgccaaagccaaag 544
Query: 541 aataagaataccttctttgcaaagaacaaaggcggcgccggt 582
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aataagaataccttctttgcaaagaacaaaggcggcgccggt 586
>gnl|LJGI|TC69524 similar to UniRef100_Q53PV2 Cluster: AT5g09850/MYH9_6; n=2; Oryza
sativa Japonica Group|Rep: AT5g09850/MYH9_6 - Oryza
sativa subsp. japonica (Rice), partial (15%)
Length = 561
Score = 353 bits (178), Expect = 8e-97
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 405 gagagataataatctggaagcggagagacttgcttcagcaagaaagaggcttcaagagaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gagagataataatctggaagcggagagacttgcttcagcaagaaagaggcttcaagagaa 61
Query: 465 ctacaaagaggctgcaaatgccaaaaagcaaagaacaattcaggtgatggacctccatga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctacaaagaggctgcaaatgccaaaaagcaaagaacaattcaggtgatggacctccatga 121
Query: 525 gttgccaaagccaaagaataagaataccttctttgcaaagaacaaaggcggcgccggt 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gttgccaaagccaaagaataagaataccttctttgcaaagaacaaaggcggcgccggt 179
>gnl|LJGI|TC76407 similar to UniRef100_A7Q7A6 Cluster: Chromosome chr18 scaffold_59,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_59, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (51%)
Length = 1941
Score = 155 bits (78), Expect = 4e-37
Identities = 165/194 (85%)
Strand = Plus / Plus
Query: 379 actcctcaaaatagacagagagaacagagagataataatctggaagcggagagacttgct 438
||||||||||||| || ||||||||||| ||| ||| | || ||||||| ||||||
Sbjct: 1144 actcctcaaaataagcaaagagaacagaggaatagcaattttgaggcggagaagcttgct 1203
Query: 439 tcagcaagaaagaggcttcaagagaactacaaagaggctgcaaatgccaaaaagcaaaga 498
|| |||||||| |||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct: 1204 tcggcaagaaaacggcttcaagagaactacagagatgctgaaaatgccaaaaagcaaaga 1263
Query: 499 acaattcaggtgatggacctccatgagttgccaaagccaaagaataagaataccttcttt 558
|| |||||||||||||| |||||||||| |||||| |||| ||||| |||||||||
Sbjct: 1264 acgattcaggtgatggatatccatgagttaccaaagtcaaaatccaagaacaccttcttt 1323
Query: 559 gcaaagaacaaagg 572
| ||||||||||||
Sbjct: 1324 ggaaagaacaaagg 1337
Score = 143 bits (72), Expect = 1e-33
Identities = 126/144 (87%)
Strand = Plus / Plus
Query: 1 atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtttg 60
|||||| ||||||||||||| ||| | || ||||||||||||||||||||||||| |||
Sbjct: 763 atggatattacattccaagcgttaaaggattctgacattgggaggcatgtgaatcggttg 822
Query: 61 cggaagcattcgtccaatgaagttaggagattggtcaagctacttgtcaggaagtggaag 120
|| |||||| | |||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct: 823 cgcaagcatccttccaatgaagttcgccgattggttaagctacttgtcaggaagtggaag 882
Query: 121 gaacttgtagatgaatgggtgaag 144
|| |||| ||||| |||||||||
Sbjct: 883 gagattgttgatgagtgggtgaag 906
>gnl|LJGI|CB828469 similar to UniRef100_A7Q7A6 Cluster: Chromosome chr18 scaffold_59,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr18 scaffold_59, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (26%)
Length = 518
Score = 137 bits (69), Expect = 9e-32
Identities = 129/149 (86%)
Strand = Plus / Plus
Query: 424 gcggagagacttgcttcagcaagaaagaggcttcaagagaactacaaagaggctgcaaat 483
||||||| |||||||| |||||||| |||||||||||||||||| ||| |||| ||||
Sbjct: 331 gcggagaagcttgcttcggcaagaaaacggcttcaagagaactacagagatgctgaaaat 390
Query: 484 gccaaaaagcaaagaacaattcaggtgatggacctccatgagttgccaaagccaaagaat 543
||||||||||||||||| |||||||||||||| |||||||||| |||||| ||||
Sbjct: 391 gccaaaaagcaaagaacgattcaggtgatggatatccatgagttaccaaagtcaaaatcc 450
Query: 544 aagaataccttctttgcaaagaacaaagg 572
||||| |||||||||| ||| ||||||||
Sbjct: 451 aagaacaccttctttggaaataacaaagg 479
>gnl|LJGI|BP043507
Length = 442
Score = 137 bits (69), Expect = 9e-32
Identities = 113/128 (88%)
Strand = Plus / Minus
Query: 455 ttcaagagaactacaaagaggctgcaaatgccaaaaagcaaagaacaattcaggtgatgg 514
|||||||| ||||| ||||||||||||||||| |||||| |||||| | |||||||||||
Sbjct: 442 ttcaagagnactaccaagaggctgcaaatgcccaaaagccaagaaccaatcaggtgatgg 383
Query: 515 acctccatgagttgccaaagccaaagaataagaataccttctttgcaaagaacaaaggcg 574
|||||| ||||||||| ||||| ||| ||||| ||||| ||||||| ||| || ||||||
Sbjct: 382 acctccctgagttgcccaagcccaaggataaggataccctctttgccaaggaccaaggcg 323
Query: 575 gcgccggt 582
||||||||
Sbjct: 322 gcgccggt 315
>gnl|LJGI|TC71171 similar to UniRef100_Q9FIC1 Cluster: Gb|AAF19567.1; n=1;
Arabidopsis thaliana|Rep: Gb|AAF19567.1 - Arabidopsis
thaliana (Mouse-ear cress), partial (30%)
Length = 782
Score = 115 bits (58), Expect = 3e-25
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 1 atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtt 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 atggatgttacattccaagcattagaagagactgacattgggaggcatgtgaatcgtt 780