Miyakogusa Predicted Gene
- Lj0g3v0289759.3
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0289759.3 Non Chatacterized Hit- tr|I1N5W7|I1N5W7_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,44.3,9e-19,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RETROELEMENT POL POLY,CUFF.19359.3
(864 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|FS321905 similar to UniRef100_A7Q2I1 Cluster: Chromosom... 535 e-151
gnl|LJGI|TC57481 similar to UniRef100_A7PMF0 Cluster: Chromosome... 54 1e-06
>gnl|LJGI|FS321905 similar to UniRef100_A7Q2I1 Cluster: Chromosome chr1 scaffold_46,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr1 scaffold_46, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (33%)
Length = 768
Score = 535 bits (270), Expect = e-151
Identities = 270/270 (100%)
Strand = Plus / Plus
Query: 208 cctgaagcggtgatggagcaggagaaggacgctttctatgtggtgcggaaaggggacatt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cctgaagcggtgatggagcaggagaaggacgctttctatgtggtgcggaaaggggacatt 435
Query: 268 gttggagtctataacagtctcagtgactctcaggctcaagttggatcttctgtatgcgat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gttggagtctataacagtctcagtgactctcaggctcaagttggatcttctgtatgcgat 495
Query: 328 cctcctgttagtgtatacaagggatattcgttgtcgaagggcactgaggaatatcttctc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cctcctgttagtgtatacaagggatattcgttgtcgaagggcactgaggaatatcttctc 555
Query: 388 tcgcatggactaaaaaatgctttgtacactattgaagcctctgaattgaaagaggatttg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tcgcatggactaaaaaatgctttgtacactattgaagcctctgaattgaaagaggatttg 615
Query: 448 tttggcttgcttgtaccttgccctttccag 477
||||||||||||||||||||||||||||||
Sbjct: 616 tttggcttgcttgtaccttgccctttccag 645
Score = 309 bits (156), Expect = 2e-83
Identities = 190/207 (91%)
Strand = Plus / Plus
Query: 1 atgaactgcctgtcgcaactgtcatcgtatactgctaccatagtcggaaggaccgctcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 atgaactgcctgtcgcaactgtcatcgtatactgctaccatagtcggaaggaccgctcga 198
Query: 61 ttcatcgccgcgaaccgcnnnnnnnnnnnnnnnnncattctctcgttcccgaggaaatca 120
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 199 ttcatcgccgcgaaccgctcttcttcttcttcttccattctctcgttcccgaggaaatca 258
Query: 121 gcgttttccggtgttagctcttgccattcagaactcttcctcaaccggtttcattttcgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gcgttttccggtgttagctcttgccattcagaactcttcctcaaccggtttcattttcgg 318
Query: 181 tgctattccgcccgaaaagggcgcaaa 207
|||||||||||||||||||||||||||
Sbjct: 319 tgctattccgcccgaaaagggcgcaaa 345
Score = 79.8 bits (40), Expect = 3e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 477 gagagtaactggtcctacatccatctctgatgatcccttg 516
||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 gagagtaactggtcctacatccatctctgatgatcccttg 768
>gnl|LJGI|TC57481 similar to UniRef100_A7PMF0 Cluster: Chromosome chr14 scaffold_21,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr14 scaffold_21, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (37%)
Length = 860
Score = 54.0 bits (27), Expect = 1e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 583 cttgagtttgatggtgcgtcaaaaggaaatcctggaaaagctggtgc 629
||||||||||||||| | || ||||||||||||||| |||||||||
Sbjct: 166 cttgagtttgatggttcttccaaaggaaatcctggatcagctggtgc 212