Miyakogusa Predicted Gene
- Lj0g3v0288979.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0288979.2 Non Chatacterized Hit- tr|I1K3I1|I1K3I1_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,94.44,0,DNA-binding
pseudobarrel domain,DNA-binding pseudobarrel domain; B3,B3 DNA binding
domain; B3 DNA bi,CUFF.19328.2
(1038 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC64953 homologue to UniRef100_Q6L8U1 Cluster: Auxin re... 1015 0.0
gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromos... 454 e-127
gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromos... 258 6e-68
gnl|LJGI|TC61640 similar to UniRef100_A7PTN8 Cluster: Chromosome... 113 2e-24
gnl|LJGI|TC82003 similar to UniRef100_A3F771 Cluster: Auxin resp... 58 1e-07
gnl|LJGI|AV409033 homologue to UniRef100_Q6L8U3 Cluster: Auxin r... 52 7e-06
gnl|LJGI|TC66053 homologue to UniRef100_A7PHQ5 Cluster: Chromoso... 52 7e-06
>gnl|LJGI|TC64953 homologue to UniRef100_Q6L8U1 Cluster: Auxin response factor 3; n=1;
Cucumis sativus|Rep: Auxin response factor 3 - Cucumis
sativus (Cucumber), partial (26%)
Length = 713
Score = 1015 bits (512), Expect = 0.0
Identities = 518/520 (99%)
Strand = Plus / Plus
Query: 491 gtcaagagttaattgcaagggatttgcatggtaatgaatggaaattcagacatatcttcc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtcaagagttaattgcaagggatttgcatggtaatgaatggaaattcagacatatcttcc 60
Query: 551 gtggccagccgaaaaggcatctacttacaacaggatggagtgtctttgtgagtgctaaaa 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggccagccgaaaaggcatctacttacaacaggatggagtgtctttgtgagtgctaaaa 120
Query: 611 gactagttgctggtgattctgtgctgtttatctggaatgaaaagaatgaattgcttctcg 670
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 121 gactagttgctggtgattctgtgctgttaatctggaatgaaaagaatgaattgcttctcg 180
Query: 671 gcattcggcatgctaatagaccacaacctatgatgccttcatcggtgctgtcaagtgata 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcattcggcatgctaatagaccacaacctatgatgccttcatcggtgctgtcaagtgata 240
Query: 731 gcatgcacttggggcttcttgctgctgcagctcatgcagctgcaacaaatagtcgtttca 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcatgcacttggggcttcttgctgctgcagctcatgcagctgcaacaaatagtcgtttca 300
Query: 791 ccattttctataacccgcgtactagcccatcagaatttgtcatacctttagcgaagtatg 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccattttctataacccgcgtactagcccatcagaatttgtcatacctttagcgaagtatg 360
Query: 851 ttaaagctgtgtatcatactcgagtttcagttggtatgctcttcaggatgctatttgaaa 910
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 361 ttaaagctgtgtatcatactcgagtttcagttggtatgcgcttcaggatgctatttgaaa 420
Query: 911 cagaggaatctagtgtgcggcgatatatgggcacgataactagcattagtgacatggatt 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagaggaatctagtgtgcggcgatatatgggcacgataactagcattagtgacatggatt 480
Query: 971 cttcccggtggccaaattcacattggcgctccgtcaaggt 1010
||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 cttcccggtggccaaattcacattggcgctccgtcaaggt 520
>gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromosome chr10
scaffold_43, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr10 scaffold_43, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 435
Score = 454 bits (229), Expect = e-127
Identities = 382/433 (88%)
Strand = Plus / Plus
Query: 94 cttgtttctttaccagctgtaggaagccgcgtagtctactttccacaaggtcacagtgaa 153
||||| ||||| ||||| | ||||||||||| || ||||||||||||||||||||||||
Sbjct: 3 cttgtctctttgccagcacttggaagccgcgtggtgtactttccacaaggtcacagtgaa 62
Query: 154 caggttgctgtatctaccaacagggaagtggatgctcacatccccaactatccaagttta 213
||||| ||||| || || |||| ||||||||||||||| || || ||||||||||| |||
Sbjct: 63 caggtagctgtgtcaactaacaaggaagtggatgctcatattccaaactatccaagctta 122
Query: 214 cctccccaacttatctgtcaacttcataatgtgactatgcatgcagatactgagacagac 273
||||| ||||| || ||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct: 123 cctcctcaactgatttgtcaacttcataatgtgactatgcatgctgatgctgagactgat 182
Query: 274 gaagtatacgtgcagatgaccttgcaacctctgaatcctgaagagcagaaggagggatac 333
||||| || | ||||||||||||||||||||||||||| ||||||| ||||| | ||||
Sbjct: 183 gaagtttatgctcagatgaccttgcaacctctgaatcctcaagagcaaaaggaagcatac 242
Query: 334 cttccagcagagttggggacagcgagtaaacagccaacaaattatttctgcaaaattttg 393
||||||||||||||||| || | ||||||||||||||||| ||||||||||| | ||||
Sbjct: 243 cttccagcagagttgggcactcccagtaaacagccaacaaactatttctgcaagactttg 302
Query: 394 acggccagtgatacaagcactcatgggggattctctgttcctcgccgggcagctgaaaaa 453
|| || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 303 actgctagtgacacaagcactcatgggggattctctgtgcctcgccgggcagctgaaaaa 362
Query: 454 gtttttcctccattggacttttcacagcagcctccttgtcaagagttaattgcaagggat 513
|| ||||||||||||||||| || || ||||||||| ||| ||| ||||||||||||||
Sbjct: 363 gtgtttcctccattggacttctcccaacagcctcctgctcaggagctaattgcaagggat 422
Query: 514 ttgcatggtaatg 526
|||||||| ||||
Sbjct: 423 ttgcatggcaatg 435
>gnl|LJGI|BP042557 homologue to UniRef100_A7PJQ8 Cluster: Chromosome chr12
scaffold_18, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr12 scaffold_18, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (22%)
Length = 545
Score = 258 bits (130), Expect = 6e-68
Identities = 376/458 (82%)
Strand = Plus / Plus
Query: 400 agtgatacaagcactcatgggggattctctgttcctcgccgggcagctgaaaaagttttt 459
|||||||| ||||||||||| ||||| ||||||||||| | |||||||||||||| ||
Sbjct: 86 agtgataccagcactcatggaggattttctgttcctcgaagagcagctgaaaaagtcttc 145
Query: 460 cctccattggacttttcacagcagcctccttgtcaagagttaattgcaagggatttgcat 519
||||| | || | ||||||||||||||| |||||| ||||||| || ||| | ||
Sbjct: 146 cctcctcttgattactcacagcagcctcctgctcaagaactaattgcgagagatcttaat 205
Query: 520 ggtaatgaatggaaattcagacatatcttccgtggccagccgaaaaggcatctacttaca 579
| || |||||||||||||||||||| ||||| || ||||| ||||||||||| || ||
Sbjct: 206 gacaacgaatggaaattcagacatatattccgaggtcagcctaaaaggcatcttctgact 265
Query: 580 acaggatggagtgtctttgtgagtgctaaaagactagttgctggtgattctgtgctgttt 639
|||||||||||||||||||| ||||||||||| || ||||| |||||||| || || ||
Sbjct: 266 acaggatggagtgtctttgtcagtgctaaaaggcttgttgccggtgattcagtccttttc 325
Query: 640 atctggaatgaaaagaatgaattgcttctcggcattcggcatgctaatagaccacaacct 699
|||||||||||||||||| || | || | |||||||| | || ||| | | || |
Sbjct: 326 atctggaatgaaaagaatcaactactcttgggcattcgacgagcaaatcgttcgcagacc 385
Query: 700 atgatgccttcatcggtgctgtcaagtgatagcatgcacttggggcttcttgctgctgca 759
|| ||||| |||||||| ||||||||||||||||||||| | || |||||||||||||||
Sbjct: 386 attatgccatcatcggttctgtcaagtgatagcatgcacattggccttcttgctgctgca 445
Query: 760 gctcatgcagctgcaacaaatagtcgtttcaccattttctataacccgcgtactagccca 819
|||||||||||| | ||||||||||| || ||||| |||||||| || | | ||||||
Sbjct: 446 gctcatgcagcttccacaaatagtcgctttaccatattctataatcctagggcaagccca 505
Query: 820 tcagaatttgtcatacctttagcgaagtatgttaaagc 857
|| |||||||| || ||||| || |||| ||||||||
Sbjct: 506 tctgaatttgtaattcctttggcccagtacgttaaagc 543
>gnl|LJGI|TC61640 similar to UniRef100_A7PTN8 Cluster: Chromosome undetermined
scaffold_30, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome undetermined scaffold_30, whole
genome shotgun sequence - Vitis vinifera (Grape),
partial (22%)
Length = 730
Score = 113 bits (57), Expect = 2e-24
Identities = 177/217 (81%)
Strand = Plus / Plus
Query: 62 attcagaactttggcatgcttgtgctggtcctcttgtttctttaccagctgtaggaagcc 121
|||| |||||||||||||| |||||||| ||||| ||||| | || | | |||||||
Sbjct: 480 attctgaactttggcatgcatgtgctggccctctggtttccctgcctcccattggaagcc 539
Query: 122 gcgtagtctactttccacaaggtcacagtgaacaggttgctgtatctaccaacagggaag 181
| |||||||||||||| |||||||||||||| |||||||||| || || ||||||||||
Sbjct: 540 gtgtagtctactttccccaaggtcacagtgagcaggttgctgcttcaactaacagggaag 599
Query: 182 tggatgctcacatccccaactatccaagtttacctccccaacttatctgtcaacttcata 241
| ||||| || || || || || || | || || || || ||||||||||||||||| |
Sbjct: 600 tagatgcacatattcctaattaccccaacttgccgccacagcttatctgtcaacttcaca 659
Query: 242 atgtgactatgcatgcagatactgagacagacgaagt 278
||| || |||||||||||| |||| ||||| |||||
Sbjct: 660 atgaaacaatgcatgcagatgctgaaacagatgaagt 696
>gnl|LJGI|TC82003 similar to UniRef100_A3F771 Cluster: Auxin response factor 8; n=1;
Ipomoea nil|Rep: Auxin response factor 8 - Ipomoea nil
(Japanese morning glory) (Pharbitis nil), partial (4%)
Length = 1468
Score = 58.0 bits (29), Expect = 1e-07
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 62 attcagaactttggcatgcttgtgctggtcctcttgtttctttaccagctgtaggaagcc 121
|||| |||||||||| ||| |||||||| ||||| |||||| | || |||| |||||
Sbjct: 513 attctgaactttggcctgcatgtgctggccctctggtttctctgcctcctgttggaagtg 572
Query: 122 gcgtagtctactttccacaaggtcacagtgaacaggt 158
| |||||||||||||| ||| ||||||||| |||||
Sbjct: 573 gtgtagtctactttccccaatatcacagtgagcaggt 609
>gnl|LJGI|AV409033 homologue to UniRef100_Q6L8U3 Cluster: Auxin response factor 1;
n=1; Cucumis sativus|Rep: Auxin response factor 1 -
Cucumis sativus (Cucumber), partial (13%)
Length = 418
Score = 52.0 bits (26), Expect = 7e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 400 agtgatacaagcactcatgggggattctctgttcctcg 437
|||||||||||||||||||| ||||| ||||| |||||
Sbjct: 381 agtgatacaagcactcatggtggattttctgtgcctcg 418
>gnl|LJGI|TC66053 homologue to UniRef100_A7PHQ5 Cluster: Chromosome chr17
scaffold_16, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr17 scaffold_16, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (31%)
Length = 1177
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 73 tggcatgcttgtgctggtcctcttgt 98
||||||||||||||||||||||||||
Sbjct: 390 tggcatgcttgtgctggtcctcttgt 415