Miyakogusa Predicted Gene

Lj0g3v0288779.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0288779.1 tr|G7L8K6|G7L8K6_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_8g046310 PE=4 SV=1,45.19,2e-19,F_box_assoc_1: F-box
protein interaction domain,F-box associated interaction domain;
FBA_1,F-box ass,CUFF.19313.1
         (409 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77125 weakly similar to UniRef100_A2Q228 Cluster: Cyc...   329   8e-90

>gnl|LJGI|TC77125 weakly similar to UniRef100_A2Q228 Cluster: Cyclin-like F-box; F-box
            protein interaction domain; n=1; Medicago truncatula|Rep:
            Cyclin-like F-box; F-box protein interaction domain -
            Medicago truncatula (Barrel medic), partial (32%)
          Length = 1362

 Score =  329 bits (166), Expect = 8e-90
 Identities = 302/347 (87%), Gaps = 9/347 (2%)
 Strand = Plus / Plus

                                                                        
Query: 65   atttggtgtcattcaactttagcaatgagatattctatacaacgcccttaccattagat- 123
            |||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| 
Sbjct: 795  atttggggtcattcaactttagcaatgagatattctacacaacgcccttaccgttagatc 854

                                                                        
Query: 124  -----gatagaagggtgcagaatgacttggcggtgttaaatgagtctattgcggtgatat 178
                 |||| | ||  ||||||  ||||||| |||||||||||||| |||||  ||||||
Sbjct: 855  tggctgatacagggaagcagaactacttggcagtgttaaatgagtccattgcattgatat 914

                                                                        
Query: 179  ctaatcatgatgaaacagcaactttacacatatcgatattgggtgaaatcggtatgaagg 238
            | |  ||||| |||||| ||||||| ||||||| ||| ||||||||  || ||   ||||
Sbjct: 915  caatacatgaagaaacaacaacttttcacatatggattttgggtgagctctgtgcaaagg 974

                                                                        
Query: 239  aatcatggactaaacttttcactgttggacttggacctttgcatggctttgagtttatta 298
            ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||  ||
Sbjct: 975  aatcatggactaaacttttcactgttggacttggacccttgcatggctttgggcttccta 1034

                                                                        
Query: 299  ttggagtagggaagatgggcgatatattcttcagaaatgaaaatggtgaactagtagcct 358
            ||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||
Sbjct: 1035 ttggagtagggaagatgggcgatatattcttcagaaaagaaaatggtgaac---tagcct 1091

                                                           
Query: 359  tgtttgatttaagtacccagatgctcaaggagattgctgctacagag 405
            |||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1092 tgttcgatttaagtactcatatgctcaaggagattgctgctacagag 1138