Miyakogusa Predicted Gene
- Lj0g3v0288409.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0288409.1 tr|G7K1M6|G7K1M6_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_5g057020 PE=4 SV=1,31.6,1e-18,seg,NULL; FBA_1,F-box
associated domain, type 1; F_box_assoc_1: F-box protein interaction
domain,F-b,CUFF.19315.1
(1068 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC60928 1748 0.0
gnl|LJGI|TC74128 similar to UniRef100_A7Q9Q9 Cluster: Chromosome... 343 1e-93
gnl|LJGI|AV773742 similar to UniRef100_O94827-2 Cluster: Isoform... 194 8e-49
gnl|LJGI|BP041527 UniRef100_Q2Q667 Cluster: Cytochrome c oxidase... 121 9e-27
gnl|LJGI|AV423520 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 78 1e-13
gnl|LJGI|DC597111 similar to UniRef100_Q2HWB4 Cluster: Cyclin-li... 60 3e-08
gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-lik... 60 3e-08
gnl|LJGI|FS328144 similar to UniRef100_A7Q9Q9 Cluster: Chromosom... 54 2e-06
>gnl|LJGI|TC60928
Length = 1186
Score = 1748 bits (882), Expect = 0.0
Identities = 882/882 (100%)
Strand = Plus / Plus
Query: 187 ctcagctcttatccagtcggatatgcctttgattcctacgcagccacgcggttagagtac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ctcagctcttatccagtcggatatgcctttgattcctacgcagccacgcggttagagtac 148
Query: 247 cctcccaactatactgtccactcttctgttatctttagctcttgtgatggcattctctgt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cctcccaactatactgtccactcttctgttatctttagctcttgtgatggcattctctgt 208
Query: 307 tcgtactgcttcggaagccgtatcgttcaggcatggaacccttggactaggacctttgtg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcgtactgcttcggaagccgtatcgttcaggcatggaacccttggactaggacctttgtg 268
Query: 367 aaatcgccgccattggaaaatattaagccagggtattctgtaattgagacgtcgttaggg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaatcgccgccattggaaaatattaagccagggtattctgtaattgagacgtcgttaggg 328
Query: 427 ttcggttacgatcgtctcactgaaagttataaggcggttaagatgatttttgacgctgat 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcggttacgatcgtctcactgaaagttataaggcggttaagatgatttttgacgctgat 388
Query: 487 catggtctcaaaactcgagtgatgattcatacgtttggtaccagtttttggagaaggatg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catggtctcaaaactcgagtgatgattcatacgtttggtaccagtttttggagaaggatg 448
Query: 547 gaggtggatttttgccccgttgataaaacaggaacatttgcttatggaacaatttactgg 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaggtggatttttgccccgttgataaaacaggaacatttgcttatggaacaatttactgg 508
Query: 607 atagcttctgtggtttgggattcgaagaagcggtttattgtttgtcttgatgtggggaag 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atagcttctgtggtttgggattcgaagaagcggtttattgtttgtcttgatgtggggaag 568
Query: 667 gagtcctttcaggaacttcggctgcctaaattagatgacctaaacctcacattgggagtg 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gagtcctttcaggaacttcggctgcctaaattagatgacctaaacctcacattgggagtg 628
Query: 727 ttgcgagattgcttgtgcgttgtttctcatgagcagttgttttgggatatttgggtcatt 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttgcgagattgcttgtgcgttgtttctcatgagcagttgttttgggatatttgggtcatt 688
Query: 787 aaggagcatggaaagtgttggactaaattattcagtattcctgaggattgtagctgtttt 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaggagcatggaaagtgttggactaaattattcagtattcctgaggattgtagctgtttt 748
Query: 847 ccgcttaaccagcctcattatatttctgaggataaggaagaattactaccactgtcttcc 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ccgcttaaccagcctcattatatttctgaggataaggaagaattactaccactgtcttcc 808
Query: 907 tttcggggtttagttgtttataggcgtgcaactcctacggacaaagttactcggattttt 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tttcggggtttagttgtttataggcgtgcaactcctacggacaaagttactcggattttt 868
Query: 967 tatattgaaaacatcaaagcttggattctcccagagatgtcctactcctatgagccagtt 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 tatattgaaaacatcaaagcttggattctcccagagatgtcctactcctatgagccagtt 928
Query: 1027 gtctacacagagagtttgatatcaccctgtcctcaatattag 1068
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gtctacacagagagtttgatatcaccctgtcctcaatattag 970
Score = 141 bits (71), Expect = 1e-32
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 1 atggcgtcaggtggcgacaccaccgacggcggaaccctaacaccaccaccgtcactccct 60
|||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||
Sbjct: 6 atggcgtcaggtggcgacaccaacgacggcggaaccctaacaccgccaccttcactccct 65
Query: 61 tcctcttccaatcctcccggcaactca 87
|||||||||||||||||||| ||||||
Sbjct: 66 tcctcttccaatcctcccggaaactca 92
>gnl|LJGI|TC74128 similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 501
Score = 343 bits (173), Expect = 1e-93
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 1 atggcgtcaggtggcgacaccaccgacggcggaaccctaacaccaccaccgtcactccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 atggcgtcaggtggcgacaccaccgacggcggaaccctaacaccaccaccgtcactccct 132
Query: 61 tcctcttccaatcctcccggcaactcactcccggcgccgccgcttccaacccttgcatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tcctcttccaatcctcccggcaactcactcccggcgccgccgcttccaacccttgcatcc 192
Query: 121 gagctcgtggaagaaatcctatgtagggttccggtgaagtctcttttgcgatt 173
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gagctcgtggaagaaatcctatgtagggttccggtgaagtctcttttgcgatt 245
Score = 291 bits (147), Expect = 5e-78
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 187 ctcagctcttatccagtcggatatgcctttgattcctacgcagccacgcggttagagtac 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctcagctcttatccagtcggatatgcctttgattcctacgcagccacgcggttagagtac 414
Query: 247 cctcccaactatactgtccactcttctgttatctttagctcttgtgatggcattctctgt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cctcccaactatactgtccactcttctgttatctttagctcttgtgatggcattctctgt 474
Query: 307 tcgtactgcttcggaagccgtatcgtt 333
|||||||||||||||||||||||||||
Sbjct: 475 tcgtactgcttcggaagccgtatcgtt 501
>gnl|LJGI|AV773742 similar to UniRef100_O94827-2 Cluster: Isoform 2 of O94827 ; n=1;
Homo sapiens|Rep: Isoform 2 of O94827 - Homo sapiens
(Human), partial (1%)
Length = 345
Score = 194 bits (98), Expect = 8e-49
Identities = 110/114 (96%)
Strand = Plus / Minus
Query: 955 actcggattttttatattgaaaacatcaaagcttggattctcccagagatgtcctactcc 1014
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 345 actcggattttttatattgaaaacatccaagcttggattctcccagagatgtcctactcc 286
Query: 1015 tatgagccagttgtctacacagagagtttgatatcaccctgtcctcaatattag 1068
||||||||||| |||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 285 tatgagccagtcgtctacacagagagtttgatatcaacctgtcctccatattag 232
>gnl|LJGI|BP041527 UniRef100_Q2Q667 Cluster: Cytochrome c oxidase subunit I; n=1;
Ligidium euboicum|Rep: Cytochrome c oxidase subunit I -
Ligidium euboicum, partial (9%)
Length = 432
Score = 121 bits (61), Expect = 9e-27
Identities = 64/65 (98%)
Strand = Plus / Minus
Query: 1004 tgtcctactcctatgagccagttgtctacacagagagtttgatatcaccctgtcctcaat 1063
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 432 tgtcctactcctatgagccagttgtctacacagggagtttgatatcaccctgtcctcaat 373
Query: 1064 attag 1068
|||||
Sbjct: 372 attag 368
>gnl|LJGI|AV423520 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (15%)
Length = 468
Score = 77.8 bits (39), Expect = 1e-13
Identities = 101/121 (83%), Gaps = 3/121 (2%)
Strand = Plus / Plus
Query: 44 caccaccgtcactcccttcctcttccaatcctcccggcaactcact---cccggcgccgc 100
||||||| ||| | |||||||||||||| |||| |||| ||||||| |||| ||||||
Sbjct: 94 caccaccttcatttccttcctcttccaaccctcacggcgactcacttcacccgccgccgc 153
Query: 101 cgcttccaacccttgcatccgagctcgtggaagaaatcctatgtagggttccggtgaagt 160
|||| ||||||||| | | ||||||||||| ||||||||||| ||| | || |||||||
Sbjct: 154 cgctgccaacccttccgttcgagctcgtggtggaaatcctatgcaggctccccgtgaagt 213
Query: 161 c 161
|
Sbjct: 214 c 214
>gnl|LJGI|DC597111 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (9%)
Length = 591
Score = 60.0 bits (30), Expect = 3e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 59 cttcctcttccaatcctcccggcaactcactcccggcgccgccgcttcca 108
||||||||||||| ||||||||| ||||||||| ||||| |||||||||
Sbjct: 47 cttcctcttccaaccctcccggcgactcactccaagcgccaccgcttcca 96
>gnl|LJGI|TC58483 similar to UniRef100_Q2HWB4 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (12%)
Length = 786
Score = 60.0 bits (30), Expect = 3e-08
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 59 cttcctcttccaatcctcccggcaactcactcccggcgccgccgcttcca 108
||||||||||||| ||||||||| ||||||||| ||||| |||||||||
Sbjct: 94 cttcctcttccaaccctcccggcgactcactccaagcgccaccgcttcca 143
>gnl|LJGI|FS328144 similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5 scaffold_67,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_67, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (9%)
Length = 760
Score = 54.0 bits (27), Expect = 2e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 103 cttccaacccttgcatccgagctcgtggaagaaatcctatgtagggttccggtgaagtct 162
||||| || ||| ||| ||||||| |||||| ||||| || ||| ||||||||||||||
Sbjct: 442 cttcccacacttccattcgagctcatggaagttatcctctgcaggcttccggtgaagtct 501
Query: 163 cttttgcgatt 173
|| ||||||||
Sbjct: 502 ctcttgcgatt 512