Miyakogusa Predicted Gene
- Lj0g3v0287829.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0287829.1 tr|G7KNR1|G7KNR1_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_6g025090 PE=4 SV=1,36.89,0.093,seg,NULL;
F-box domain,F-box domain, cyclin-like; RNI-like,NULL; FAMILY NOT
NAMED,NULL; no descripti,CUFF.19234.1
(1164 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BP063614 similar to UniRef100_A2Q574 Cluster: Cyclin-li... 167 2e-40
gnl|LJGI|TC73420 weakly similar to UniRef100_A2Q574 Cluster: Cyc... 139 4e-32
gnl|LJGI|TC72353 weakly similar to UniRef100_A2Q574 Cluster: Cyc... 105 6e-22
gnl|LJGI|BP071245 similar to UniRef100_A2Q574 Cluster: Cyclin-li... 94 2e-18
gnl|LJGI|FS344820 weakly similar to UniRef100_A2Q574 Cluster: Cy... 86 6e-16
gnl|LJGI|TC65637 similar to UniRef100_A2Q574 Cluster: Cyclin-lik... 78 1e-13
gnl|LJGI|GO023715 weakly similar to UniRef100_A2Q574 Cluster: Cy... 64 2e-09
gnl|LJGI|TC61828 similar to UniRef100_A2Q574 Cluster: Cyclin-lik... 58 1e-07
gnl|LJGI|TC75251 weakly similar to UniRef100_A2Q574 Cluster: Cyc... 52 8e-06
>gnl|LJGI|BP063614 similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (14%)
Length = 508
Score = 167 bits (84), Expect = 2e-40
Identities = 279/344 (81%)
Strand = Plus / Plus
Query: 74 aagatagactcagcaatttacctgattgcattctccttcaccttttatcatttcttaaag 133
||||||||||||| | || ||||||||||||||||||||| || |||||||| | ||||
Sbjct: 165 aagatagactcagtgacttgcctgattgcattctccttcacattctatcatttgtgaaag 224
Query: 134 tcaaatacgcagttcaaacatgcgtgttatccacaagatggaaggatctttggaaacgtc 193
|||| ||| |||||||| ||| | || |||||||||||||||||||| ||||||||||
Sbjct: 225 ccaaagccgcggttcaaacttgcatattgtccacaagatggaaggatctctggaaacgtc 284
Query: 194 ttcataaccttatcttactctcctcagacttttccagtttgcggagtttcaccaaattta 253
||| | ||| || |||| |||||| |||||| | | ||| |||||||||||
Sbjct: 285 ttccttccctcatactactgtcctcaaacttttggacatataagagcttcaccaaattcg 344
Query: 254 tgtctaggcttttgactcttcgcgacggctcgatcgcgctgcagaacctagatttcgagc 313
||||| ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||
Sbjct: 345 tgtctcggcttttgactcttcgcgatggctcgaccgcgctgcacggtctagattttgagc 404
Query: 314 gtgagggtttcgtggagcctcatcttctcaaaaggatcatgaaatacgctgtttcacaca 373
||| ||| | | ||||||| || ||||||||||| | ||||| |||||||||||||
Sbjct: 405 atgatggtcacattcagcctcacctcctcaaaaggattgtaaaatatgctgtttcacaca 464
Query: 374 atatccagcaattaagattgtctgtcaggtgtgatattaaacac 417
|| |||| | |||| ||||||| |||| ||||| |||| |||||
Sbjct: 465 atgtccaacgattaggattgtccgtcacgtgtgctattgaacac 508
>gnl|LJGI|TC73420 weakly similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (23%)
Length = 714
Score = 139 bits (70), Expect = 4e-32
Identities = 112/126 (88%)
Strand = Plus / Plus
Query: 96 tgattgcattctccttcaccttttatcatttcttaaagtcaaatacgcagttcaaacatg 155
||||||||||||||||||| |||| |||||||| | | |||||||||||||| ||||||
Sbjct: 218 tgattgcattctccttcacattttgtcatttctgagcgccaaatacgcagttcgaacatg 277
Query: 156 cgtgttatccacaagatggaaggatctttggaaacgtcttcataaccttatcttactctc 215
| ||||||||| ||||||||||||||| |||||||| |||| |||||||| ||||||||
Sbjct: 278 catgttatccaaaagatggaaggatctctggaaacgccttccgaaccttattttactctc 337
Query: 216 ctcaga 221
||||||
Sbjct: 338 ctcaga 343
>gnl|LJGI|TC72353 weakly similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (37%)
Length = 1467
Score = 105 bits (53), Expect = 6e-22
Identities = 302/385 (78%), Gaps = 10/385 (2%)
Strand = Plus / Plus
Query: 91 ttacctgattgcattctccttcaccttttatcatttcttaaagtcaaatacgcagttcaa 150
||||||||||| || |||||| || ||||||||||| | |||| |||| ||| ||| |||
Sbjct: 245 ttacctgattgtatactcctttacattttatcatttgtgaaagccaaacacgtagtccaa 304
Query: 151 acatgcgtgttatccacaagatggaaggatctttggaaacgtcttcataaccttatctta 210
|||||||| ||||||| ||||||||||||||||||||||| ||| | | |||||| |||
Sbjct: 305 acatgcgtattatccaaaagatggaaggatctttggaaacatctcccaacccttatttta 364
Query: 211 ctctcctcagacttttccagtttgcgg-------agtttcaccaaatttatgtctaggct 263
| ||| |||||| || ||||| | || ||||||||||| ||||| | ||
Sbjct: 365 cattcccttgactttacccgtttgtcgagcttcaagcttcaccaaattcgtgtctcgcct 424
Query: 264 tttgactcttcgcgacggctcgatcgcgctgcagaacctagatttcgagcgtgagggttt 323
| ||||||||||||| |||| | ||||||||| |||||||| |||||| ||||
Sbjct: 425 tctgactcttcgcgatcgctcaaccgcgctgcacggtctagattttgagcgtcttggttg 484
Query: 324 cgtggagcctcatcttctcaaaaggatcatgaaatacgctgtttcacacaatatccagca 383
| ||||||| || ||||||||||| | || || || |||||||||||| | ||||
Sbjct: 485 tattcagcctcacctcctcaaaaggattgtaaagtatgccgtttcacacaatgtgcagcg 544
Query: 384 attaagattgtctgtc---aggtgtgatattaaacactttccgcactgcatcatttcatc 440
|||| ||||| ||||| | | ||||||| ||||||||||| | ||||| |||||||
Sbjct: 545 attaggattgactgtcacaacatctgatatttaacactttccgtattgcattttttcatc 604
Query: 441 taagaccttgacatctcttaagctc 465
|||||| |||||||||||||||||
Sbjct: 605 taagactctgacatctcttaagctc 629
Score = 67.9 bits (34), Expect = 1e-10
Identities = 125/154 (81%), Gaps = 6/154 (3%)
Strand = Plus / Plus
Query: 511 ttatttccaaaatctctttataatttgccagcattaacgagcttgcatctagtgaatttt 570
|||||||| ||||||||| | |||||||||| |||| | ||||||| |||||||||||
Sbjct: 666 ttatttccgaaatctctt---agtttgccagcactaactaccttgcatttagtgaatttt 722
Query: 571 gccttttgggaaaatcaccatggca---ttgccgagcctttttcggcctttatcaagttg 627
| |||||| | |||| | |||||| |||| ||||| ||||| | || | |||||||
Sbjct: 723 gacttttgtgcaaatgatgatggcattgttgctgagcccttttcagttttaaccaagttg 782
Query: 628 aatagtttgatcattgagaattgtagcctcagtg 661
||||||||||||||||| || |||| ||| ||||
Sbjct: 783 aatagtttgatcattgaaaactgtaacctaagtg 816
>gnl|LJGI|BP071245 similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (13%)
Length = 552
Score = 93.7 bits (47), Expect = 2e-18
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 74 aagatagactcagcaatttacctgattgcattctccttcaccttttatcatttcttaaag 133
||||||||||||| | || ||||||||| ||||||||||| || | |||||| | || |
Sbjct: 380 aagatagactcagtgacttgcctgattgcgttctccttcacattctgtcatttgtgaatg 439
Query: 134 tcaaatacgcagttcaaacatgcgtgttatccacaagatggaaggatctttggaaacgtc 193
||| || ||||||||||| ||| ||||||||||||||||||||||| ||||||||||
Sbjct: 440 ccaagtatgcagttcaaacttgcacattatccacaagatggaaggatctctggaaacgtc 499
Query: 194 ttc 196
|||
Sbjct: 500 ttc 502
>gnl|LJGI|FS344820 weakly similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (24%)
Length = 859
Score = 85.7 bits (43), Expect = 6e-16
Identities = 159/199 (79%), Gaps = 9/199 (4%)
Strand = Plus / Plus
Query: 1 atgtctaattcaaccgatgagatgctgatttcgccgaaggcgaagagaggaagacacaac 60
|||||||||||||| ||||||||| ||||| ||||||| |||||||||||||| |||
Sbjct: 93 atgtctaattcaactgatgagatgttgattccgccgaatgcgaagagaggaaggaacagt 152
Query: 61 aagagtgaaaatgaagata---------gactcagcaatttacctgattgcattctcctt 111
||| |||||||||||| | | ||||| | | |||||| |||||||||||
Sbjct: 153 gagaatgaaaatgaagacaacaaagacaggctcagtgaccttcctgatggcattctcctt 212
Query: 112 caccttttatcatttcttaaagtcaaatacgcagttcaaacatgcgtgttatccacaaga 171
||| ||||||||||| | || | |||||| |||||||||||||| | ||||| | |||
Sbjct: 213 cacattttatcatttatgaatgccaaatatgcagttcaaacatgtatcttatcggctaga 272
Query: 172 tggaaggatctttggaaac 190
||||||||||| |||||||
Sbjct: 273 tggaaggatctctggaaac 291
Score = 54.0 bits (27), Expect = 2e-06
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 532 aatttgccagcattaacgagcttgcatctagtgaattttgccttttg 578
||||||||||||||||| | ||||||||| |||||||| |||||||
Sbjct: 597 aatttgccagcattaaccaccttgcatctggtgaatttcaccttttg 643
>gnl|LJGI|TC65637 similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (13%)
Length = 732
Score = 77.8 bits (39), Expect = 1e-13
Identities = 138/171 (80%)
Strand = Plus / Plus
Query: 97 gattgcattctccttcaccttttatcatttcttaaagtcaaatacgcagttcaaacatgc 156
|||||| |||| |||||| |||| |||||| | |||| || | ||||||||||| |||
Sbjct: 275 gattgcgttctgcttcacattttgtcatttgtgaaagccaggaatgcagttcaaacttgc 334
Query: 157 gtgttatccacaagatggaaggatctttggaaacgtcttcataaccttatcttactctcc 216
| ||||||||||||||||||||||| |||||| |||||| | || || ||||| |||
Sbjct: 335 atattatccacaagatggaaggatctatggaaaagtcttccttcgctcattttactttcc 394
Query: 217 tcagacttttccagtttgcggagtttcaccaaatttatgtctaggcttttg 267
|||||||||| | ||| || |||||||||||| |||||| |||||||
Sbjct: 395 ccagacttttcgacattgaagattttcaccaaattcgtgtctaagcttttg 445
>gnl|LJGI|GO023715 weakly similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (14%)
Length = 555
Score = 63.9 bits (32), Expect = 2e-09
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 319 ggtttcgtggagcctcatcttctcaaaaggatcatgaaatacgctgtttcacacaatatc 378
|||||||| ||||||||||| ||||||||| || | || |||||| ||||||||||| ||
Sbjct: 432 ggtttcgtcgagcctcatctcctcaaaagggtcgtaaactacgctatttcacacaatgtc 491
Query: 379 cagcaattaagattgtctgtcaggtgtg 406
|| || ||| |||||||||| |||||
Sbjct: 492 caacagttagctttgtctgtcacgtgtg 519
>gnl|LJGI|TC61828 similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (6%)
Length = 881
Score = 58.0 bits (29), Expect = 1e-07
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 912 tcctttcattctactcagctggctgctaaaacttcccaatataaaattattgacattctc 971
|||||| ||| |||| ||||||||| || | ||| |||||||||||| ||||||| | ||
Sbjct: 243 tcctttgattttactgagctggctggtagagcttaccaatataaaatcattgacagtatc 302
Query: 972 ggcatgtactcttcaggctctcttc 996
||| | |||||||||| |||||||
Sbjct: 303 tgcaagaactcttcaggttctcttc 327
>gnl|LJGI|TC75251 weakly similar to UniRef100_A2Q574 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (14%)
Length = 718
Score = 52.0 bits (26), Expect = 8e-06
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 910 cctcctttcattctactcagctggctgctaaaacttcccaatataaaattattgacattc 969
|||||||| ||||||||||||||||| | | ||| | ||||| |||| ||||||| ||
Sbjct: 49 cctcctttggttctactcagctggctggaagagcttactaatatcaaatcattgacagtc 108
Query: 970 tcggcatgtactcttcaggctctcttctta 999
|| || ||||||||||| ||||||||||
Sbjct: 109 tctacaaatactcttcaggttctcttctta 138