Miyakogusa Predicted Gene

Lj0g3v0285839.1
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0285839.1 Non Chatacterized Hit- tr|I3S6M1|I3S6M1_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,62.57,0,K-box,Transcription factor, K-box; MADS BOX PROTEIN,NULL;
seg,NULL; coiled-coil,NULL; K_BOX,Transcri,CUFF.19066.1
         (513 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|GO037100 homologue to UniRef100_A0EIX6 Cluster: Transcr...    84   1e-15
gnl|LJGI|BP067878 similar to UniRef100_A1XG54 Cluster: SOC1; n=1...    58   6e-08

>gnl|LJGI|GO037100 homologue to UniRef100_A0EIX6 Cluster: Transcription factor AGL20;
           n=1; Ipomoea batatas|Rep: Transcription factor AGL20 -
           Ipomoea batatas (Sweet potato) (Batate), partial (33%)
          Length = 371

 Score = 83.8 bits (42), Expect = 1e-15
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                     
Query: 1   atgctggagtcaattgaacgataccgcaaacataccaggaat 42
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atgctggagtcaattgaacgataccgcaaacataccaggaat 371


>gnl|LJGI|BP067878 similar to UniRef100_A1XG54 Cluster: SOC1; n=1; Glycine max|Rep:
           SOC1 - Glycine max (Soybean), partial (34%)
          Length = 395

 Score = 58.0 bits (29), Expect = 6e-08
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 269 ttgagcaactaaaagaaaaggaaaaagtgctagtggcagaaaactccaggctctctgaga 328
           |||||||||||||||| ||||||||||| ||| | || |||||  |||| ||| ||||| 
Sbjct: 353 ttgagcaactaaaagagaaggaaaaagtcctacttgctgaaaatgccagactcactgagc 294

                    
Query: 329 agtatggta 337
           |||||||||
Sbjct: 293 agtatggta 285



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 415 tatggtgaaagtagttcaagttcagatgtggagactgaattgttcattgg 464
           |||| |||||| ||| | ||||||||||| || |||||||||||||||||
Sbjct: 240 tatgctgaaagcagtcccagttcagatgtagaaactgaattgttcattgg 191