Miyakogusa Predicted Gene

Lj0g3v0285529.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0285529.1 Non Chatacterized Hit- tr|C5XRC0|C5XRC0_SORBI
Putative uncharacterized protein Sb03g041420
OS=Sorghu,45.13,1e-16,coiled-coil,NULL,CUFF.19050.1
         (987 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP036127 similar to UniRef100_A7NV49 Cluster: Chromosom...   331   5e-90
gnl|LJGI|TC80790 similar to UniRef100_A7NV49 Cluster: Chromosome...    96   5e-19

>gnl|LJGI|BP036127 similar to UniRef100_A7NV49 Cluster: Chromosome chr18 scaffold_1,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_1, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (17%)
          Length = 503

 Score =  331 bits (167), Expect = 5e-90
 Identities = 167/167 (100%)
 Strand = Plus / Minus

                                                                       
Query: 821 agtgggaaatggaggttggtttgagggagagagtggagaatctcagaatgtgttttgggg 880
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtgggaaatggaggttggtttgagggagagagtggagaatctcagaatgtgttttgggg 444

                                                                       
Query: 881 tgctgaaatctggtgcagagagtgttgtttgccagctagatgatttctttgatgagattg 940
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgctgaaatctggtgcagagagtgttgtttgccagctagatgatttctttgatgagattg 384

                                                          
Query: 941 tggagggtaggaagaagcttttggatttttgtagtcataggtgaatt 987
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tggagggtaggaagaagcttttggatttttgtagtcataggtgaatt 337


>gnl|LJGI|TC80790 similar to UniRef100_A7NV49 Cluster: Chromosome chr18 scaffold_1,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_1, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (25%)
          Length = 1077

 Score = 95.6 bits (48), Expect = 5e-19
 Identities = 132/160 (82%)
 Strand = Plus / Plus

                                                                       
Query: 823 tgggaaatggaggttggtttgagggagagagtggagaatctcagaatgtgttttggggtg 882
           |||||||  ||||||||| |||| || |||||||||||||| |||   | ||||||||| 
Sbjct: 90  tgggaaacagaggttggtgtgagagacagagtggagaatctgagagcatcttttggggtt 149

                                                                       
Query: 883 ctgaaatctggtgcagagagtgttgtttgccagctagatgatttctttgatgagattgtg 942
           || | |||||| |||||||   || ||   ||||| ||||||||||||||||||||||| 
Sbjct: 150 ctcagatctggggcagagaacattattgctcagcttgatgatttctttgatgagattgtt 209

                                                   
Query: 943 gagggtaggaagaagcttttggatttttgtagtcataggt 982
           || || ||||||||||||||||| ||||| || |||||||
Sbjct: 210 gaaggaaggaagaagcttttggacttttgcagccataggt 249