Miyakogusa Predicted Gene
- Lj0g3v0282319.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0282319.1 tr|Q7XJ94|Q7XJ94_RAPSA Pentatricopeptide
repeat-containing protein OS=Raphanus sativus GN=Ppr.24
PE=,24.21,1e-18,HCP-like,NULL; PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR_2,Pentatricopeptid,CUFF.18810.1
(1030 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|BI418759 similar to UniRef100_Q6E438 Cluster: ACT11D09.... 811 0.0
gnl|LJGI|TC57479 similar to UniRef100_Q6E438 Cluster: ACT11D09.4... 684 0.0
gnl|LJGI|TC65337 270 2e-71
gnl|LJGI|TC77477 242 4e-63
>gnl|LJGI|BI418759 similar to UniRef100_Q6E438 Cluster: ACT11D09.4; n=1; Cucumis
melo|Rep: ACT11D09.4 - Cucumis melo (Muskmelon), partial
(19%)
Length = 507
Score = 811 bits (409), Expect = 0.0
Identities = 423/430 (98%)
Strand = Plus / Plus
Query: 426 gttctttaacaatggcagggacaaggaggccatggactcgtacaagtctttgatggacag 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttctttaacaatggcagggacaaggaggccatggactcgtacaagtctttgatggacag 60
Query: 486 acagtttaagatgacccctgtcacttgcaatgtcttgttggaggtcttgcttaaacacgg 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagtttaagatgacccctgtcacttgcaatgtcttgttggaggtcttgcttaaacacgg 120
Query: 546 cnnnnnnncacaggcttgggctctgtttgatcagatgttagataaccacaccccacctaa 605
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaaaaaacacaggcttgggctctgtttgatcagatgttagataaccacaccccacctaa 180
Query: 606 ttttcaagctgtaaactctgataccttcaacataatggttaatgagtgctttaatctggg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttcaagctgtaaactctgataccttcaacataatggttaatgagtgctttaatctggg 240
Query: 666 caagttccatgaagcactggcaacttttaggaaggctggaactaagtcaaattctaaggc 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagttccatgaagcactggcaacttttaggaaggctggaactaagtcaaattctaaggc 300
Query: 726 ttttgcaatggatgttgcgggctacaataatatcatctccaggttttgtgagaatgggtt 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttttgcaatggatgttgcgggctacaataatatcatctccaggttttgtgagaatgggtt 360
Query: 786 gctgtccgaagcagagacactgtttgaagaactgtgctcaaaatctttgagcccagatgt 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gctgtccgaagcagagacactgtttgaagaactgtgctcaaaatctttgagcccagatgt 420
Query: 846 gcccactcac 855
||||||||||
Sbjct: 421 gcccactcac 430
>gnl|LJGI|TC57479 similar to UniRef100_Q6E438 Cluster: ACT11D09.4; n=1; Cucumis
melo|Rep: ACT11D09.4 - Cucumis melo (Muskmelon), partial
(25%)
Length = 826
Score = 684 bits (345), Expect = 0.0
Identities = 345/345 (100%)
Strand = Plus / Plus
Query: 1 atgtaccgtgccaagaggtacaacgaggctattgctctctttcacttcttcttcacccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 atgtaccgtgccaagaggtacaacgaggctattgctctctttcacttcttcttcacccag 541
Query: 61 tcaaacatcgttcccaatattgtctcttacaacaatgtcatcaatacccattgcgatgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcaaacatcgttcccaatattgtctcttacaacaatgtcatcaatacccattgcgatgag 601
Query: 121 ggtcgtgttgatgttgctcttgagctttatcgccatatcattgccactgcccctttcggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ggtcgtgttgatgttgctcttgagctttatcgccatatcattgccactgcccctttcggc 661
Query: 181 ccttctgcggttacctatcgccatctcaccaagggttttatcagcgccggtcgcattgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ccttctgcggttacctatcgccatctcaccaagggttttatcagcgccggtcgcattgtt 721
Query: 241 gaagcccttgatctcttgcgtgagatgttgaataaaggtcacggtgccgattccttggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 gaagcccttgatctcttgcgtgagatgttgaataaaggtcacggtgccgattccttggtt 781
Query: 301 tataacaacctaatttcaggttttctcgaactgggcaatctggac 345
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tataacaacctaatttcaggttttctcgaactgggcaatctggac 826
>gnl|LJGI|TC65337
Length = 698
Score = 270 bits (136), Expect = 2e-71
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 895 cccaccactgccacctcaaaatactggaatgcatcaaccttcatggggagtatctcctcc 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 cccaccactgccacctcaaaatactggaatgcatcaaccttcatggggagtatctcctcc 78
Query: 955 aatgactgggcctcaaatgccagcagctggaccttcacctcatacctcgggactgcctta 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 aatgactgggcctcaaatgccagcagctggaccttcacctcatacctcgggactgcctta 138
Query: 1015 ctcccctccatctgaa 1030
||||||||||||||||
Sbjct: 139 ctcccctccatctgaa 154
>gnl|LJGI|TC77477
Length = 846
Score = 242 bits (122), Expect = 4e-63
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 909 ctcaaaatactggaatgcatcaaccttcatggggagtatctcctccaatgactgggcctc 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctcaaaatactggaatgcatcaaccttcatggggagtatctcctccaatgactgggcctc 61
Query: 969 aaatgccagcagctggaccttcacctcatacctcgggactgccttactcccctccatctg 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 aaatgccagcagctggaccttcacctcatacctcgggactgccttactcccctccatctg 121
Query: 1029 aa 1030
||
Sbjct: 122 aa 123