Miyakogusa Predicted Gene
- Lj0g3v0282089.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0282089.1 tr|D3GBU7|D3GBU7_LOTJA Auxin response factor 3b
OS=Lotus japonicus GN=ARF3b PE=2 SV=1,98.32,0,DNA-binding pseudobarrel
domain,DNA-binding pseudobarrel domain; no description,DNA-binding
pseudoba,gene.g21911.t1.1
(1902 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57738 similar to UniRef100_A2Q532 Cluster: Transcript... 1025 0.0
gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcript... 791 0.0
gnl|LJGI|TC60440 similar to UniRef100_A2Q532 Cluster: Transcript... 127 3e-28
gnl|LJGI|TC81860 similar to UniRef100_A2Q532 Cluster: Transcript... 72 1e-11
gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromos... 64 3e-09
>gnl|LJGI|TC57738 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3; Auxin
response factor; n=1; Medicago truncatula|Rep:
Transcriptional factor B3; Auxin response factor -
Medicago truncatula (Barrel medic), partial (15%)
Length = 926
Score = 1025 bits (517), Expect = 0.0
Identities = 569/592 (96%), Gaps = 21/592 (3%)
Strand = Plus / Plus
Query: 1224 agacgaggctcgtggatatggtcgcttcggtcgttttgatggttatcaaccacttagctc 1283
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4 agacgaggctcgtggatatggtcgcttcggtcgttttgatggtcatcaaccacttagctc 63
Query: 1284 cagaaatgggtggcctgcccagatgcatgacaacacttcacatttgcacacatcagttac 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagaaatgggtggcctgcccagatgcatgacaacacttcacatttgcacacatcagttac 123
Query: 1344 atccgggcaagtgtcatctccatcatctgtgttaatgttccagcaggcaattaatccagt 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 atccgggcaagtgtcatctccatcatctgtgttaatgttccagcaggcaattaatccagt 183
Query: 1404 ttcaaaccgtgattataacatggagagagagggtaaagtgcattaccaaggttcatatgc 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttcaaaccgtgattataacatggagagagagggtaaagtgcattaccaaggttcatatgc 243
Query: 1464 atctgaagtgaaaggtggagcatttgcaccttccctttctgataaccctattttatctgg 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atctgaagtgaaaggtggagcatttgcaccttccctttctgataaccctattttatctgg 303
Query: 1524 aagagc---------------------nggtgtgtttagtaattttcatagtcagctggg 1562
|||||| ||||||||||||||||||||||||||||||||
Sbjct: 304 aagagctcaggaaggtgcaaacacttttggtgtgtttagtaattttcatagtcagctggg 363
Query: 1563 cagttcaaggctccatgattcagtttcagcaatgagaagcagtcaagagttggttccctc 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagttcaaggctccatgattcagtttcagcaatgagaagcagtcaagagttggttccctc 423
Query: 1623 atgcaaaagtggctgcagactctttggtttttcattaactgaagacacacacattgcaaa 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atgcaaaagtggctgcagactctttggtttttcattaactgaagacacacacattgcaaa 483
Query: 1683 tgaagagactgaggcttctaattctggaccttcctttactagacttgttgaagatgaatt 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgaagagactgaggcttctaattctggaccttcctttactagacttgttgaagatgaatt 543
Query: 1743 ccacccaggcctttcactcaggagtaaaggggttgggagtaactgcacaaaa 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccacccaggcctttcactcaggagtaaaggggttgggagtaactgcacaaaa 595
>gnl|LJGI|TC61200 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3; Auxin
response factor; n=1; Medicago truncatula|Rep:
Transcriptional factor B3; Auxin response factor -
Medicago truncatula (Barrel medic), partial (37%)
Length = 1325
Score = 791 bits (399), Expect = 0.0
Identities = 399/399 (100%)
Strand = Plus / Plus
Query: 43 caagtggagaaaaacttaggggaaggggacactgatgctgatggtgaagaggatactgaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 caagtggagaaaaacttaggggaaggggacactgatgctgatggtgaagaggatactgaa 986
Query: 103 gctatggtgaagtcaacaacacctcacatgttctgcaagactctgacagcttcagacact 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 gctatggtgaagtcaacaacacctcacatgttctgcaagactctgacagcttcagacact 1046
Query: 163 agcactcatggtggattctctgtgcctcgtcgagctgctgaagattgctttcctcccctg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 agcactcatggtggattctctgtgcctcgtcgagctgctgaagattgctttcctcccctg 1106
Query: 223 gactacagtcaacaacgaccttcacaagagcttgttgccaaggatctgcatggcttggaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 gactacagtcaacaacgaccttcacaagagcttgttgccaaggatctgcatggcttggaa 1166
Query: 283 tggaagtttcgacatatatacagggggcagccgcgcaggcatttgctcacaactgggtgg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 tggaagtttcgacatatatacagggggcagccgcgcaggcatttgctcacaactgggtgg 1226
Query: 343 agtgcattcgtaaacaagaagaagcttgtatctggcgatgctgtcttgtttcttaggggt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 agtgcattcgtaaacaagaagaagcttgtatctggcgatgctgtcttgtttcttaggggt 1286
Query: 403 gatgatggggaactgagattagggattcgtagggcagct 441
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 gatgatggggaactgagattagggattcgtagggcagct 1325
>gnl|LJGI|TC60440 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3;
Auxin response factor; n=1; Medicago truncatula|Rep:
Transcriptional factor B3; Auxin response factor -
Medicago truncatula (Barrel medic), partial (21%)
Length = 766
Score = 127 bits (64), Expect = 3e-28
Identities = 94/104 (90%)
Strand = Plus / Plus
Query: 91 gaggatactgaagctatggtgaagtcaacaacacctcacatgttctgcaagactctgaca 150
|||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||| ||
Sbjct: 663 gaggatactgaaactatgatgaagtcatcaacaccccacatgttctgcaagactctcact 722
Query: 151 gcttcagacactagcactcatggtggattctctgtgcctcgtcg 194
|| || || ||||| |||||||||||||||||||||||||||||
Sbjct: 723 gcatctgatactagtactcatggtggattctctgtgcctcgtcg 766
>gnl|LJGI|TC81860 similar to UniRef100_A2Q532 Cluster: Transcriptional factor B3; Auxin
response factor; n=1; Medicago truncatula|Rep:
Transcriptional factor B3; Auxin response factor -
Medicago truncatula (Barrel medic), partial (3%)
Length = 882
Score = 71.9 bits (36), Expect = 1e-11
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1605 tcaagagttggttccctcatgcaaaagtggctgcagactctttggtttttcattaactga 1664
||||||| ||||| ||||||| |||||| |||||||| |||||||||||||| |||||||
Sbjct: 392 tcaagaggtggtttcctcatgtaaaagtagctgcagagtctttggtttttcagtaactga 451
Score = 60.0 bits (30), Expect = 5e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 1319 cttcacatttgcacacatcagttacatccgggcaagtgtcatctccatcatctgtgttaa 1378
||||||||||||| ||| ||| || |||||||||| |||||||| |||||||||||||
Sbjct: 76 cttcacatttgcatcaatctgttccagccgggcaagtttcatctccttcatctgtgttaa 135
Query: 1379 tgttccagca 1388
||| |||||
Sbjct: 136 cgtttcagca 145
>gnl|LJGI|AV410062 homologue to UniRef100_A7Q186 Cluster: Chromosome chr10
scaffold_43, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr10 scaffold_43, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (17%)
Length = 435
Score = 63.9 bits (32), Expect = 3e-09
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 133 ttctgcaagactctgacagcttcagacactagcactcatggtggattctctgtgcctcgt 192
|||||||||||| |||| ||| ||||| ||||||||||| |||||||||||||||||
Sbjct: 288 ttctgcaagactttgactgctagtgacacaagcactcatgggggattctctgtgcctcgc 347
Query: 193 cgagctgctgaa 204
|| || ||||||
Sbjct: 348 cgggcagctgaa 359