Miyakogusa Predicted Gene

Lj0g3v0280759.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0280759.1 Non Chatacterized Hit- tr|D8QYZ8|D8QYZ8_SELML
Putative uncharacterized protein OS=Selaginella
moelle,61.33,1e-18,Cmc1,Cytochrome c oxidase biogenesis protein
Cmc1-like,CUFF.18668.1
         (546 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71429 similar to UniRef100_Q10NU8 Cluster: Expressed ...   638   0.0  
gnl|LJGI|FS354977                                                     268   3e-71

>gnl|LJGI|TC71429 similar to UniRef100_Q10NU8 Cluster: Expressed protein; n=2; Oryza
           sativa|Rep: Expressed protein - Oryza sativa subsp.
           japonica (Rice), partial (89%)
          Length = 569

 Score =  638 bits (322), Expect = 0.0
 Identities = 322/322 (100%)
 Strand = Plus / Plus

                                                                       
Query: 225 gaataatctgaatcccaacctctctcaatctcaaacctcaatgggttacattcaagacgc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaataatctgaatcccaacctctctcaatctcaaacctcaatgggttacattcaagacgc 60

                                                                       
Query: 285 gcgtgagaatcacgtcaagaagaaagaggaagaagctttacgcagcaaaatgaagcagaa 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcgtgagaatcacgtcaagaagaaagaggaagaagctttacgcagcaaaatgaagcagaa 120

                                                                       
Query: 345 ggcattgaaacagtgtgatcgttacacggcaaaatatgctgaatgcgcttcagggagaac 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggcattgaaacagtgtgatcgttacacggcaaaatatgctgaatgcgcttcagggagaac 180

                                                                       
Query: 405 actgtctgttgtttggcaatgtcgccaacaagctaaagaattgaacgaatgtcttcatca 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actgtctgttgtttggcaatgtcgccaacaagctaaagaattgaacgaatgtcttcatca 240

                                                                       
Query: 465 cttcaccaatgattctgtcttggaggaaatgaagaaagcgtacatgctaaaacaaggtgg 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cttcaccaatgattctgtcttggaggaaatgaagaaagcgtacatgctaaaacaaggtgg 300

                                 
Query: 525 agagggctctgctagaatctag 546
           ||||||||||||||||||||||
Sbjct: 301 agagggctctgctagaatctag 322


>gnl|LJGI|FS354977 
          Length = 725

 Score =  268 bits (135), Expect = 3e-71
 Identities = 162/171 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggtttgaataaacccttgccggtttacatactaatacaatacggatatgagacttcc 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 462 atgggtttgaataaacccttgccggtttacatactaatataatacggatataagacttcc 521

                                                                       
Query: 61  gtattcaatacggaaatgtgtcttccatattcaattaaaggggggcgttccagtaatttc 120
           ||||| |||||||||||||  ||||| ||||| |||||||||||||||||||||||||||
Sbjct: 522 gtattgaatacggaaatgttgcttccgtattctattaaaggggggcgttccagtaatttc 581

                                                              
Query: 121 cccactttaagtggggcggggagccccataggggggccaaacccaactccc 171
           ||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 582 cccactttaagtggggcggggagccccataggggccccaaacccaactccc 632