Miyakogusa Predicted Gene

Lj0g3v0279449.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0279449.1 tr|A2Q1B8|A2Q1B8_MEDTR Homeobox domain, ZF-HD
class; ZF-HD homeobox protein Cys/His-rich dimerisatio,58.01,0,no
description,Homeodomain-like; Homeodomain-like,Homeodomain-like;
homeo_ZF_HD: homeobox domain, ZF,CUFF.18585.1
         (783 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC71222 similar to UniRef100_A2Q1B8 Cluster: Homeobox d...   335   2e-91
gnl|LJGI|TC76609 similar to UniRef100_A7PMV8 Cluster: Chromosome...    62   5e-09
gnl|LJGI|TC81711 similar to UniRef100_A7NUQ6 Cluster: Chromosome...    60   2e-08
gnl|LJGI|TC75814 similar to UniRef100_Q9ARE4 Cluster: ZF-HD home...    60   2e-08

>gnl|LJGI|TC71222 similar to UniRef100_A2Q1B8 Cluster: Homeobox domain, ZF-HD class;
           ZF-HD homeobox protein Cys/His-rich dimerisation region;
           Homeodomain-like; n=1; Medicago truncatula|Rep: Homeobox
           domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich
           dimerisation region; Homeodomain-like - Medicago
           truncatula (Barrel medic), partial (18%)
          Length = 598

 Score =  335 bits (169), Expect = 2e-91
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 398 aggaaaagatgctgaaattcgctgagagagttgggtggaaaatgcagaagaaggacgagg 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aggaaaagatgctgaaattcgctgagagagttgggtggaaaatgcagaagaaggacgagg 60

                                                                       
Query: 458 attttgttcaggatttctgcaacgagattggaattgaaagaggggttctcaaagtttgga 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attttgttcaggatttctgcaacgagattggaattgaaagaggggttctcaaagtttgga 120

                                                            
Query: 518 tgcataacaacaagaacacttttgggaagagagatggtagcaacgaaat 566
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcataacaacaagaacacttttgggaagagagatggtagcaacgaaat 169



 Score =  323 bits (163), Expect = 9e-88
 Identities = 177/184 (96%)
 Strand = Plus / Plus

                                                                       
Query: 600 tgctggttctgctaagagnnnnnnngcaaaggaaaatcatgaccctgttatcaccaacat 659
           ||||||||||||||||||       |||||||||||||||||||||||||||||||||||
Sbjct: 203 tgctggttctgctaagagtttttttgcaaaggaaaatcatgaccctgttatcaccaacat 262

                                                                       
Query: 660 tagcagcgcctctgaaatcaatggcaatggaaatcgcaaccatggtgctgaggatccaat 719
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagcagcgcctctgaaatcaatggcaatggaaatcgcaaccatggtgctgaggatccaat 322

                                                                       
Query: 720 tcatcatcacttccagaacgatggtggagcaacagttcgtgctaatgggtcatcttcatc 779
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcatcatcacttccagaacgatggtggagcaacagttcgtgctaatgggtcatcttcatc 382

               
Query: 780 ttga 783
           ||||
Sbjct: 383 ttga 386


>gnl|LJGI|TC76609 similar to UniRef100_A7PMV8 Cluster: Chromosome chr14 scaffold_21,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr14 scaffold_21, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (18%)
          Length = 615

 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 115/143 (80%)
 Strand = Plus / Plus

                                                                       
Query: 403 aagatgctgaaattcgctgagagagttgggtggaaaatgcagaagaaggacgaggatttt 462
           ||||||||| | || || ||||| ||||||||||| |||||||||| ||| || ||||| 
Sbjct: 2   aagatgctggagtttgcggagagggttgggtggaagatgcagaagagggatgaagatttg 61

                                                                       
Query: 463 gttcaggatttctgcaacgagattggaattgaaagaggggttctcaaagtttggatgcat 522
           ||   ||| |||||| | ||| | ||  |||| ||||||||||||||  | |||||||| 
Sbjct: 62  gtcatggagttctgccatgaggtcggtgttgacagaggggttctcaagctctggatgcac 121

                                  
Query: 523 aacaacaagaacacttttgggaa 545
           ||| |||||||||| || |||||
Sbjct: 122 aaccacaagaacacgttcgggaa 144


>gnl|LJGI|TC81711 similar to UniRef100_A7NUQ6 Cluster: Chromosome chr18 scaffold_1,
           whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
           Chromosome chr18 scaffold_1, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (37%)
          Length = 840

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 502 gttctcaaagtttggatgcataacaacaagaacacttttgggaaga 547
           |||||||| ||||||||||||||||||||| ||||| |||| ||||
Sbjct: 305 gttctcaaggtttggatgcataacaacaagcacactcttggtaaga 350


>gnl|LJGI|TC75814 similar to UniRef100_Q9ARE4 Cluster: ZF-HD homeobox protein; n=1;
           Flaveria bidentis|Rep: ZF-HD homeobox protein - Flaveria
           bidentis (Coastalplain yellowtops), partial (22%)
          Length = 519

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 502 gttctcaaagtttggatgcataacaacaagaacacttttgggaaga 547
           |||||||| ||||||||||||||||||||| ||||| |||| ||||
Sbjct: 103 gttctcaaggtttggatgcataacaacaagcacactcttggtaaga 148