Miyakogusa Predicted Gene

Lj0g3v0278949.2
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0278949.2 tr|G7J3H4|G7J3H4_MEDTR Class III HD-Zip protein
OS=Medicago truncatula GN=MTR_3g109800 PE=3
SV=1,90.85,0,Homeodomain-like,Homeodomain-like;
HOMEOBOX_2,Homeodomain; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAME,CUFF.18563.2
         (432 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC70081 homologue to UniRef100_A8E664 Cluster: Class II...   100   1e-20
gnl|LJGI|BP056674 similar to UniRef100_Q5D1M5 Cluster: Class III...    90   1e-17

>gnl|LJGI|TC70081 homologue to UniRef100_A8E664 Cluster: Class III HD-Zip protein
           CNA2; n=1; Medicago truncatula|Rep: Class III HD-Zip
           protein CNA2 - Medicago truncatula (Barrel medic),
           partial (20%)
          Length = 652

 Score = 99.6 bits (50), Expect = 1e-20
 Identities = 143/174 (82%)
 Strand = Plus / Plus

                                                                       
Query: 73  tacacgccggagcaggtggaagcacttgaaaggctttaccatgaatgccccaaacccacc 132
           |||||||| |||||||| ||||| || || |||||||| || || ||||| || ||||  
Sbjct: 401 tacacgccagagcaggttgaagccctcgagaggctttatcacgagtgccctaagcccagt 460

                                                                       
Query: 133 tccctccgccgccaacaactcatcagagagtgccccattctctctcacatagaacctaag 192
           ||| | |||||||| || |||||  | |||||| | ||||||||  |||| || |||| |
Sbjct: 461 tccattcgccgccagcagctcatacgcgagtgcgctattctctccaacattgagcctagg 520

                                                                 
Query: 193 cagatcaaggtttggttccaaaacagaaggtgcagagagaagcagaggaaagaa 246
           |||||||| ||||||||||| |||||||| || |||||||||||||| ||||||
Sbjct: 521 cagatcaaagtttggttccagaacagaagatgtagagagaagcagagaaaagaa 574


>gnl|LJGI|BP056674 similar to UniRef100_Q5D1M5 Cluster: Class III HD-Zip protein 2;
           n=1; Populus trichocarpa|Rep: Class III HD-Zip protein 2
           - Populus trichocarpa (Western balsam poplar) (Populus
           balsamiferasubsp. trichocarpa), partial (18%)
          Length = 553

 Score = 89.7 bits (45), Expect = 1e-17
 Identities = 141/173 (81%)
 Strand = Plus / Plus

                                                                       
Query: 184 gaacctaagcagatcaaggtttggttccaaaacagaaggtgcagagagaagcagaggaaa 243
           ||||| ||||||||||| |||||||| || ||  | ||||| |||||||||||||| |||
Sbjct: 228 gaaccgaagcagatcaaagtttggtttcagaatcgcaggtgtagagagaagcagagaaaa 287

                                                                       
Query: 244 gaatcatcacggctgcaagctgtgaacaggaagctaacagcgatgaataaactattgatg 303
           ||  | ||  |||| || ||||||||| ||||||| |  || ||||| ||| | ||||||
Sbjct: 288 gaggcttctaggcttcaggctgtgaaccggaagctgaatgcaatgaacaaattgttgatg 347

                                                                
Query: 304 gaggaaaacgacagattgcagaagcaggtgtcacagttggtgtacgagaatgg 356
           ||||| || ||  | |||||||| |||||||||||||||||||  ||||||||
Sbjct: 348 gaggagaatgatcggttgcagaaacaggtgtcacagttggtgtgtgagaatgg 400