Miyakogusa Predicted Gene
- Lj0g3v0277959.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0277959.1 tr|G7JPK5|G7JPK5_MEDTR Nucleoporin NUP188-like
protein OS=Medicago truncatula GN=MTR_4g075330 PE=4
S,73.45,0,seg,NULL,CUFF.18470.1
(4032 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC82194 similar to UniRef100_A7P871 Cluster: Chromosome... 779 0.0
gnl|LJGI|TC67872 weakly similar to UniRef100_Q33AZ7 Cluster: Exp... 200 5e-50
gnl|LJGI|DC599494 UniRef100_A1L198 Cluster: MUC12 protein; n=2; ... 119 1e-25
gnl|LJGI|BP069813 similar to UniRef100_A3KP35 Cluster: Zgc:16291... 111 3e-23
gnl|LJGI|TC78131 similar to UniRef100_Q5EAE7 Cluster: At5g57410;... 90 1e-16
gnl|LJGI|BP053395 similar to UniRef100_A0CMB3 Cluster: Chromosom... 80 1e-13
>gnl|LJGI|TC82194 similar to UniRef100_A7P871 Cluster: Chromosome chr3 scaffold_8,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr3 scaffold_8, whole genome shotgun sequence
- Vitis vinifera (Grape), partial (7%)
Length = 664
Score = 779 bits (393), Expect = 0.0
Identities = 424/433 (97%), Gaps = 1/433 (0%)
Strand = Plus / Plus
Query: 3600 atatcttcttttacaatttctgtgtttacaagctgagggtgcttctaaaagggctgagga 3659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atatcttcttttacaatttctgtgtttacaagctgagggtgcttctaaaagggctgagga 60
Query: 3660 ggtagggtttgttgatcttgcacattttcctgaacttccaatgccagaaatcttgcatgg 3719
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 g-tagggtttgttgatcttgcacattttcctgaacttccaatgccagaaatcttgcatgg 119
Query: 3720 actgcaggatcaagcttctgtcattgttgcggagctctgtcaagccaataaactgaggga 3779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 actgcaggatcaagcttctgtcattgttgcggagctctgtcaagccaataaactgaggga 179
Query: 3780 atccccagaaacacagaatgtttgcaagttactgttgcaaatacttgaaatggccttgta 3839
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 180 atccccagaaacacagaatgtttgcaagttattgttgcaaatacttgaaatggccttgta 239
Query: 3840 cttggaactttgtgttctacaaatttgtggcataagacctgtattaggacgtgtggagga 3899
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttggaactttgtgttctaccaatttgtggcataagacctgtattaggacgtgtggagga 299
Query: 3900 cttctcaaagggagccagatctttatttagtgcattggagggtcatgcttttctaaaagc 3959
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 300 cttctccaagggagcccgatctttatttagtgccttggagggtcatgcttttctaaaagc 359
Query: 3960 atataggaaatctttaaagcagatgatatcatgtatctatcctggacttttgcaagcaga 4019
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct: 360 atataggaaatctttaaagccgatgatatcatgtatctatcctggacttttgccagccga 419
Query: 4020 gggtttgatttaa 4032
|||||||||||||
Sbjct: 420 gggtttgatttaa 432
>gnl|LJGI|TC67872 weakly similar to UniRef100_Q33AZ7 Cluster: Expressed protein; n=2;
Oryza sativa Japonica Group|Rep: Expressed protein -
Oryza sativa subsp. japonica (Rice), partial (6%)
Length = 1165
Score = 200 bits (101), Expect = 5e-50
Identities = 182/208 (87%), Gaps = 2/208 (0%)
Strand = Plus / Plus
Query: 3518 atggtcaagccgctgggtctactgatgctgttccaaaaacatgcttctctgacactgttg 3577
|||||||||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 713 atggtcaagcagctgggtgtactgattctgttccaaaaacatgcttctttgacactgttg 772
Query: 3578 ctgtgcaggtgtatagaattacatatcttcttttacaatttctgtgtttacaagctgagg 3637
|||||||||| |||||||||| |||| | |||| ||||| |||||||||||||||| |
Sbjct: 773 ttgtgcaggtgaatagaattac--atctccctttaaaatttgtgtgtttacaagctgacg 830
Query: 3638 gtgcttctaaaagggctgaggaggtagggtttgttgatcttgcacattttcctgaacttc 3697
||| | |||||||| |||||||||| |||||| ||||| |||| ||| ||||||| |||
Sbjct: 831 gtgttgctaaaaggactgaggaggttgggttttttgatgttgcccatgttcctgaggttc 890
Query: 3698 caatgccagaaatcttgcatggactgca 3725
||||| | ||||||||||||||| ||||
Sbjct: 891 caatgtcggaaatcttgcatggattgca 918
>gnl|LJGI|DC599494 UniRef100_A1L198 Cluster: MUC12 protein; n=2; Homo sapiens|Rep:
MUC12 protein - Homo sapiens (Human), partial (2%)
Length = 155
Score = 119 bits (60), Expect = 1e-25
Identities = 84/92 (91%)
Strand = Plus / Plus
Query: 343 gtgctagacttcaccatacagcttgtagaaacaggaatagagaatgatgctctcttggca 402
|||||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 64 gtgctagacttcgccatacaccttgtagaaacgggaatagaaaatgatgctctcttggca 123
Query: 403 ttgatcatattctcttttcagtatgtcctggt 434
|| ||||| || |||||||||| |||||||||
Sbjct: 124 ttaatcattttatcttttcagtttgtcctggt 155
>gnl|LJGI|BP069813 similar to UniRef100_A3KP35 Cluster: Zgc:162915 protein; n=1; Danio
rerio|Rep: Zgc:162915 protein - Danio rerio (Zebrafish),
partial (3%)
Length = 341
Score = 111 bits (56), Expect = 3e-23
Identities = 122/143 (85%), Gaps = 2/143 (1%)
Strand = Plus / Minus
Query: 3583 caggtgtatagaattacatatcttcttttacaatttctgtgtttacaagctgagggtgct 3642
|||||| |||||||||||| || | |||| ||||| |||||||||||||||| |||| |
Sbjct: 219 caggtgaatagaattacatctc--cctttaaaatttgtgtgtttacaagctgacggtgtt 162
Query: 3643 tctaaaagggctgaggaggtagggtttgttgatcttgcacattttcctgaacttccaatg 3702
|||||||| |||||||||| |||||| ||||| |||| ||| ||||||| ||||||||
Sbjct: 161 gctaaaaggactgaggaggttgggttttttgatgttgcccatgttcctgaggttccaatg 102
Query: 3703 ccagaaatcttgcatggactgca 3725
| ||||||||||||||| ||||
Sbjct: 101 tcggaaatcttgcatggattgca 79
>gnl|LJGI|TC78131 similar to UniRef100_Q5EAE7 Cluster: At5g57410; n=2; Arabidopsis
thaliana|Rep: At5g57410 - Arabidopsis thaliana (Mouse-ear
cress), partial (7%)
Length = 538
Score = 89.7 bits (45), Expect = 1e-16
Identities = 128/153 (83%), Gaps = 2/153 (1%)
Strand = Plus / Plus
Query: 3529 gctgggtctactgatgctgttccaaaaacatgcttctctgacactgttgctgtgcaggtg 3588
||||||||||||||| |||||||||| | |||||||| |||| || ||| ||||||||||
Sbjct: 141 gctgggtctactgattctgttccaaaga-atgcttctttgactctattgttgtgcaggtg 199
Query: 3589 tatagaattacatatcttcttttacaatttctgtgtttacaagctgagggtgcttctaaa 3648
|||| | ||| || |||||||||| | ||||| || | | ||| |||| ||||| |||||
Sbjct: 200 tatacacttatatctcttcttttaaattttctatg-taataagttgagagtgctgctaaa 258
Query: 3649 agggctgaggaggtagggtttgttgatcttgca 3681
||| |||||| || |||||||||||| |||||
Sbjct: 259 aggactgagggggctgggtttgttgatgttgca 291
>gnl|LJGI|BP053395 similar to UniRef100_A0CMB3 Cluster: Chromosome undetermined
scaffold_21 whole genome shotgun sequence; n=1;
Paramecium, partial (2%)
Length = 468
Score = 79.8 bits (40), Expect = 1e-13
Identities = 126/152 (82%), Gaps = 2/152 (1%)
Strand = Plus / Minus
Query: 3529 gctgggtctactgatgctgttccaaaaacatgcttctctgacactgttgctgtgcaggtg 3588
||||||||||||||| ||||||| || | |||||||| |||| || ||| ||||||||||
Sbjct: 323 gctgggtctactgattctgttcccaaga-atgcttctttgactctattgttgtgcaggtg 265
Query: 3589 tatagaattacatatcttcttttacaatttctgtgtttacaagctgagggtgcttctaaa 3648
|||| | ||| || |||||||||| | ||||| || | | ||| |||| ||||| |||||
Sbjct: 264 tatacacttatatctcttcttttaaattttctatg-taataagttgagagtgctgctaaa 206
Query: 3649 agggctgaggaggtagggtttgttgatcttgc 3680
||| |||||| || |||||||||||| ||||
Sbjct: 205 aggactgagggggctgggtttgttgatgttgc 174