Miyakogusa Predicted Gene

Lj0g3v0277169.1
Show Alignment: 

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0277169.1 tr|B9HSR3|B9HSR3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_770235 PE=4
SV=1,27.36,0.00003,seg,NULL; no description,DNA-binding pseudobarrel
domain; DNA-binding pseudobarrel domain,DNA-bindin,CUFF.18421.1
         (408 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC77857                                                      793   0.0  
gnl|LJGI|TC77934                                                      694   0.0  

>gnl|LJGI|TC77857 
          Length = 1198

 Score =  793 bits (400), Expect = 0.0
 Identities = 406/408 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatcagtacaccttaagaagttctaagtctaagcaacagatttttgccagagtattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atgcatcagtacaccttaagaagttctaagtctaagcaacagatttttgccagagtattt 342

                                                                       
Query: 61  catccggaggaggtgtatattgttgtaccaagacaattcttgaatgattttgaagaaagt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 catcaggaggaggtgtatattgttgtaccaagacaattcttgaatgattttgaagaaagt 402

                                                                       
Query: 121 ctctctaaatatgttgaattagtggatcctgtagggaataaattatgtgttagcttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctctctaaatatgttgaattagtggatcctgtagggaataaattatgtgttagcttttat 462

                                                                       
Query: 181 tttgatcgtgatgaaccaagatttggtgctaatatttcagagttacgaactgtgcaccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tttgatcgtgatgaaccaagatttggtgctaatatttcagagttacgaactgtgcaccaa 522

                                                                       
Query: 241 atacagggaagtgtgataatttgttttatttatcttggtgatagtagatttgacatccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 atacagggaagtgtgataatttgttttatttatcttggtgatagtagatttgacatccaa 582

                                                                       
Query: 301 attagtgatctgaacttgtttgagattgagtataggaaaagaactgctcatgttgcagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 attagtgatctgaacttgtttgagattgagtataggaaaagaactgctcatgttgcagct 642

                                                           
Query: 361 aatgttgcaagttcaagtcatatgaattttcatgaagtagatggttcg 408
           ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 643 aatgttgcaagttcaagtcatctgaattttcatgaagtagatggttcg 690


>gnl|LJGI|TC77934 
          Length = 633

 Score =  694 bits (350), Expect = 0.0
 Identities = 399/410 (97%), Gaps = 4/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcatcagtacaccttaagaagttctaagtctaagcaacagatttttgccagagta-tt 59
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 221 atgcatcagtacaccttcagaagttctaagtctaagcaacaggtttttgccagagtactt 280

                                                                       
Query: 60  tcatccggaggaggtgtatattgttgtaccaagacaattcttgaatgattttgaagaaag 119
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 281 tcatccggatgaggtgtatattgttgtacccagacaattcttgaatgattttgaagaaag 340

                                                                       
Query: 120 tctctctaaatatgttgaattagtggatcctgtagggaataaattatgtgttagctttta 179
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 341 tctctctaaatatgttgaattagtggatcctgtagggaataaattctgtgttagctttta 400

                                                                       
Query: 180 ttttgatcgtgatgaaccaagatttggtgctaatatttcagagttacgaactgtgca-cc 238
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 401 ttttgatcgtgatgaacccagatttggtgctaatatttcagagttacgaactgtgcaccc 460

                                                                       
Query: 239 aaatacagggaagtgtgataatttgttttatttatcttggtgatagtagatttgacatcc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaatacagggaagtgtgataatttgttttatttatcttggtgatagtagatttgacatcc 520

                                                                       
Query: 299 aaattagtgatctgaacttgtttgagattgagtataggaaaagaactgctcatgttgcag 358
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 caattagtgatctgaacttgtttgagattgagtataggaaaagaactgctcatgttgcag 580

                                                             
Query: 359 ctaatgttgcaagttcaagtcatatgaattttcatgaagtagatggttcg 408
           |||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 581 ctaatgttgc-agttc-agtcatatgaattttcatgaagtagatggttcg 628