Miyakogusa Predicted Gene
- Lj0g3v0276669.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0276669.1 Non Chatacterized Hit- tr|K3XM87|K3XM87_SETIT
Uncharacterized protein OS=Setaria italica GN=Si003010,48.72,3e-19,CAD
& PB1 domains,NULL; AUX_IAA,AUX/IAA protein; FAMILY NOT NAMED,NULL;
IAA_ARF,Aux/IAA-ARF-dimerisa,CUFF.18357.1
(537 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC57928 similar to UniRef100_Q8RVH7 Cluster: Aux/IAA pr... 1065 0.0
gnl|LJGI|FS333032 similar to UniRef100_Q8RVH6 Cluster: Aux/IAA p... 408 e-113
gnl|LJGI|TC73899 similar to UniRef100_A7Q0Y6 Cluster: Chromosome... 309 1e-83
gnl|LJGI|TC66661 similar to UniRef100_Q8RVH6 Cluster: Aux/IAA pr... 293 6e-79
gnl|LJGI|FS359548 96 3e-19
gnl|LJGI|TC78163 similar to UniRef100_A7NW11 Cluster: Chromosome... 52 4e-06
>gnl|LJGI|TC57928 similar to UniRef100_Q8RVH7 Cluster: Aux/IAA protein; n=1; Populus
tremula x Populus tremuloides|Rep: Aux/IAA protein -
Populus tremula x Populus tremuloides, partial (57%)
Length = 1044
Score = 1065 bits (537), Expect = 0.0
Identities = 537/537 (100%)
Strand = Plus / Plus
Query: 1 atgggcaaaccctcttcttcttcttcctcctcatctactagcaggagtagaaactctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 atgggcaaaccctcttcttcttcttcctcctcatctactagcaggagtagaaactctgtt 86
Query: 61 ttctcctctgcttcctctctcacacaccaacatactgaaggccttcaaacagatcttagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ttctcctctgcttcctctctcacacaccaacatactgaaggccttcaaacagatcttagg 146
Query: 121 cttggactaggcatttccaccactcaacatgttggctcttctacttcaagggggcatagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cttggactaggcatttccaccactcaacatgttggctcttctacttcaagggggcatagt 206
Query: 181 tggcaaccaatgcaaccagatctaagtagttcacaagctgctgaagtgaatgattgcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tggcaaccaatgcaaccagatctaagtagttcacaagctgctgaagtgaatgattgcagt 266
Query: 241 gatcataacagcttctttgtgaaggtctacatggaaggcattccaattggaagaaaactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gatcataacagcttctttgtgaaggtctacatggaaggcattccaattggaagaaaactg 326
Query: 301 aatttactagttcacaatgggtaccaagaactagtaaagactcttgaacatatgtttgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatttactagttcacaatgggtaccaagaactagtaaagactcttgaacatatgtttgac 386
Query: 361 actaccattctatgggggactgagatggatggagtgcaatcagagaggtgccatgtgcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 actaccattctatgggggactgagatggatggagtgcaatcagagaggtgccatgtgcta 446
Query: 421 acttatgaagatggagaaggagacttgattatggttggagatgttccttgggaaattttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acttatgaagatggagaaggagacttgattatggttggagatgttccttgggaaattttc 506
Query: 481 ttatcagctgtaaagaggttgaagatcacccgggttgacacatttggttgttaatta 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttatcagctgtaaagaggttgaagatcacccgggttgacacatttggttgttaatta 563
>gnl|LJGI|FS333032 similar to UniRef100_Q8RVH6 Cluster: Aux/IAA protein; n=1; Populus
tremula x Populus tremuloides|Rep: Aux/IAA protein -
Populus tremula x Populus tremuloides, partial (30%)
Length = 753
Score = 408 bits (206), Expect = e-113
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 169 agggggcatagttggcaaccaatgcaaccagatctaagtagttcacaagctgctgaagtg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agggggcatagttggcaaccaatgcaaccagatctaagtagttcacaagctgctgaagtg 493
Query: 229 aatgattgcagtgatcataacagcttctttgtgaaggtctacatggaaggcattccaatt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aatgattgcagtgatcataacagcttctttgtgaaggtctacatggaaggcattccaatt 553
Query: 289 ggaagaaaactgaatttactagttcacaatgggtaccaagaactagtaaagactcttgaa 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggaagaaaactgaatttactagttcacaatgggtaccaagaactagtaaagactcttgaa 613
Query: 349 catatgtttgacactaccattctatg 374
||||||||||||||||||||||||||
Sbjct: 614 catatgtttgacactaccattctatg 639
Score = 339 bits (171), Expect = 1e-92
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 1 atgggcaaaccctcttcttcttcttcctcctcatctactagcaggagtagaaactctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27 atgggcaaaccctcttcttcttcttcctcctcatctactagcaggagtagaaactctgtt 86
Query: 61 ttctcctctgcttcctctctcacacaccaacatactgaaggccttcaaacagatcttagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ttctcctctgcttcctctctcacacaccaacatactgaaggccttcaaacagatcttagg 146
Query: 121 cttggactaggcatttccaccactcaacatgttggctcttctacttcaagg 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 cttggactaggcatttccaccactcaacatgttggctcttctacttcaagg 197
>gnl|LJGI|TC73899 similar to UniRef100_A7Q0Y6 Cluster: Chromosome chr7 scaffold_42,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr7 scaffold_42, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (23%)
Length = 760
Score = 309 bits (156), Expect = 1e-83
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 382 gagatggatggagtgcaatcagagaggtgccatgtgctaacttatgaagatggagaagga 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagatggatggagtgcaatcagagaggtgccatgtgctaacttatgaagatggagaagga 60
Query: 442 gacttgattatggttggagatgttccttgggaaattttcttatcagctgtaaagaggttg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacttgattatggttggagatgttccttgggaaattttcttatcagctgtaaagaggttg 120
Query: 502 aagatcacccgggttgacacatttggttgttaatta 537
||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagatcacccgggttgacacatttggttgttaatta 156
>gnl|LJGI|TC66661 similar to UniRef100_Q8RVH6 Cluster: Aux/IAA protein; n=1; Populus
tremula x Populus tremuloides|Rep: Aux/IAA protein -
Populus tremula x Populus tremuloides, partial (66%)
Length = 793
Score = 293 bits (148), Expect = 6e-79
Identities = 273/314 (86%), Gaps = 3/314 (0%)
Strand = Plus / Plus
Query: 211 tcacaagctgctgaagtgaatgattgcagtgatcataacagcttctttgtgaaggtctac 270
||||||| ||||||||| ||||||||||||||| | |||||||||||||||||| |||
Sbjct: 200 tcacaaggtgctgaagtaaatgattgcagtgat---agcagcttctttgtgaaggtgtac 256
Query: 271 atggaaggcattccaattggaagaaaactgaatttactagttcacaatgggtaccaagaa 330
|||||||||||||||||||| |||||||| ||| |||||| ||| ||| ||| | ||
Sbjct: 257 atggaaggcattccaattggcagaaaactcaatatactagctcatggtggttactatgag 316
Query: 331 ctagtaaagactcttgaacatatgtttgacactaccattctatgggggactgagatggat 390
|||||||||||||||| | |||||||||||||||||||||||||| || |||||||||
Sbjct: 317 ttagtaaagactcttgagaacatgtttgacactaccattctatggggaacagagatggat 376
Query: 391 ggagtgcaatcagagaggtgccatgtgctaacttatgaagatggagaaggagacttgatt 450
||||| ||| ||||||| ||||||||||||||||||||||||| |||||| || ||| |
Sbjct: 377 ggagttcaaccagagagatgccatgtgctaacttatgaagatgaagaaggggatttggtc 436
Query: 451 atggttggagatgttccttgggaaattttcttatcagctgtaaagaggttgaagatcacc 510
|||||||| ||||| |||||||| || || ||||| |||||||||||||||||||||||
Sbjct: 437 atggttggggatgtcccttgggagatgtttttatccactgtaaagaggttgaagatcacc 496
Query: 511 cgggttgacacatt 524
|||| ||||||||
Sbjct: 497 agggtagacacatt 510
>gnl|LJGI|FS359548
Length = 331
Score = 95.6 bits (48), Expect = 3e-19
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 474 aattttcttatcagctgtaaagaggttgaagatcacccgggttgacacatttggttgtta 533
|||||| || |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 294 aatttttttttcagctgtaaagaggttgaagatcccccgggttgacccatttggttgtta 235
Query: 534 atta 537
||||
Sbjct: 234 atta 231
>gnl|LJGI|TC78163 similar to UniRef100_A7NW11 Cluster: Chromosome chr5 scaffold_2,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (46%)
Length = 572
Score = 52.0 bits (26), Expect = 4e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 412 catgtgctaacttatgaagatggagaaggagacttgattatggttggagatgttccttgg 471
|||||||| |||||||| ||| |||||| || | ||| |||||||||||||| ||||||
Sbjct: 503 catgtgctgacttatgaggatcaagaaggggattggatgatggttggagatgtgccttgg 562
Query: 472 ga 473
||
Sbjct: 563 ga 564