Miyakogusa Predicted Gene

Lj0g3v0276329.2
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0276329.2 tr|Q1PFY7|Q1PFY7_ARATH CCT motif-containing
protein OS=Arabidopsis thaliana GN=At1g04500 PE=2
SV=1,42.75,6e-19,seg,NULL; CCT,CCT domain,CUFF.18336.2
         (750 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BP032958 similar to UniRef100_Q2HU26 Cluster: CCT; n=1;...   440   e-123
gnl|LJGI|BP033992 similar to UniRef100_A7QNK9 Cluster: Chromosom...    56   3e-07

>gnl|LJGI|BP032958 similar to UniRef100_Q2HU26 Cluster: CCT; n=1; Medicago
           truncatula|Rep: CCT - Medicago truncatula (Barrel
           medic), partial (29%)
          Length = 509

 Score =  440 bits (222), Expect = e-123
 Identities = 222/222 (100%)
 Strand = Plus / Minus

                                                                       
Query: 529 aggaagacattggcagacagtaggccacgtgtcagaggacggtttgcgaggaatgatgaa 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggaagacattggcagacagtaggccacgtgtcagaggacggtttgcgaggaatgatgaa 450

                                                                       
Query: 589 actgaccagaaacctacagttcagtggagccacattggtgctgcagaggaagaggatgag 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 actgaccagaaacctacagttcagtggagccacattggtgctgcagaggaagaggatgag 390

                                                                       
Query: 649 gaagatgagagttgggtcagcatctttgattccatagttgctgcagcaaatctaactcag 708
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaagatgagagttgggtcagcatctttgattccatagttgctgcagcaaatctaactcag 330

                                                     
Query: 709 gaatctcaagccagttcctcctttggtctattgtattagcac 750
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gaatctcaagccagttcctcctttggtctattgtattagcac 288


>gnl|LJGI|BP033992 similar to UniRef100_A7QNK9 Cluster: Chromosome chr2 scaffold_132,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr2 scaffold_132, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (17%)
          Length = 506

 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 490 aaccagaggaacttcaacaagaaaattaagtatgcttgcaggaagaca 537
           ||||||||||||||||||||||  ||||||||||| ||| | ||||||
Sbjct: 503 aaccagaggaacttcaacaagaccattaagtatgcatgccgaaagaca 456