Miyakogusa Predicted Gene

Lj0g3v0275279.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0275279.1 tr|E4MWC7|E4MWC7_THEHA mRNA, clone: RTFL01-07-P23
OS=Thellungiella halophila PE=2 SV=1,30.84,9e-17,seg,NULL,CUFF.18241.1
         (831 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC76550 similar to UniRef100_A9X4C3 Cluster: Small heat...   801   0.0  
gnl|LJGI|AV766947                                                     149   3e-35
gnl|LJGI|TC61043 similar to UniRef100_A7PU50 Cluster: Chromosome...    84   2e-15

>gnl|LJGI|TC76550 similar to UniRef100_A9X4C3 Cluster: Small heat shock protein; n=1;
           Senecio scandens var. incisus|Rep: Small heat shock
           protein - Senecio scandens var. incisus, partial (6%)
          Length = 554

 Score =  801 bits (404), Expect = 0.0
 Identities = 420/425 (98%), Gaps = 4/425 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgctgcagaaactgtctttgatggcttctcatggttacccttcaggtcttctcttacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 atgctgcagaaactgtctttgatggcttctcatggttacccttcaggtcttctcttacat 189

                                                                       
Query: 61  caagaactgggcttgcctggcagctatatgaag----ggttgtcaaacattattgccttc 116
           |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||
Sbjct: 190 caagaactgggcttgcctggcagctatatgaagacagggttgtcaaacattattgccttc 249

                                                                       
Query: 117 tccagtagctaaaccagacatgatcagatatcaatctccttgtcttaagccaaatctatg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tccagtagctaaaccagacatgatcagatatcaatctccttgtcttaagccaaatctatg 309

                                                                       
Query: 177 tgaggagttaacgaaaatccgaagtgattgctttgattgcaatcagtttgtcaatgctga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tgaggagttaacgaaaatccgaagtgattgctttgattgcaatcagtttgtcaatgctga 369

                                                                       
Query: 237 cttctcaactcaaaggcctgtgcttcttgatgtccaagccccttgctctgaagcattact 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 cttctcaactcaaaggcctgtgcttcttgatgtccaagccccttgctctgaagcattact 429

                                                                       
Query: 297 ttttggctttggtattgttgaaaaatgcactaagcatgatcaagttttaaacttcctaat 356
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttttggctttggtattgtttaaaaatgcactaagcatgatcaagttttaaacttcctaat 489

                                                                       
Query: 357 gtctgggactgctgaaactgggattggtggagcaaatttatcattattatcggacttgat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gtctgggactgctgaaactgggattggtggagcaaatttatcattattatcggacttgat 549

                
Query: 417 gagat 421
           |||||
Sbjct: 550 gagat 554


>gnl|LJGI|AV766947 
          Length = 324

 Score =  149 bits (75), Expect = 3e-35
 Identities = 78/79 (98%)
 Strand = Plus / Minus

                                                                       
Query: 753 aactgctccttcaagaaggagcgcaagaatactttccttgattgttgccctgttttctgg 812
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aactgctccttcaagaaggagcgcaagaatactttccttgattgttgccctgttttctgg 265

                              
Query: 813 ctcagttttgctctgatgt 831
           |||||||||||| ||||||
Sbjct: 264 ctcagttttgctttgatgt 246


>gnl|LJGI|TC61043 similar to UniRef100_A7PU50 Cluster: Chromosome chr7 scaffold_31,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr7 scaffold_31, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (8%)
          Length = 841

 Score = 83.8 bits (42), Expect = 2e-15
 Identities = 82/94 (87%), Gaps = 1/94 (1%)
 Strand = Plus / Plus

                                                                       
Query: 533 ttagttcaaagattacagttcttccagatggtcaaatcacgtttatgggtactgggattg 592
           |||||||||||||||| |||| ||||||||||||| |||| || ||||||||    ||||
Sbjct: 674 ttagttcaaagattaccgttcatccagatggtcaagtcacattcatgggtacaacaattg 733

                                             
Query: 593 agatgaaagatcttctttctgtagttgctgagtc 626
           |||||||| |||| |||||| |||||||||||||
Sbjct: 734 agatgaaa-atctactttctttagttgctgagtc 766



 Score = 52.0 bits (26), Expect = 6e-06
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                     
Query: 1   atgctgcagaaactgtctttgatggcttctcatggttaccct 42
           ||||||||||||||||  |||||| |||||||||||| ||||
Sbjct: 139 atgctgcagaaactgtgcttgatgacttctcatggttgccct 180