Miyakogusa Predicted Gene
- Lj0g3v0274949.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0274949.1 tr|B9HPB5|B9HPB5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650211 PE=4
SV=1,43.75,7e-19,seg,NULL,CUFF.18220.1
(465 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC76933 similar to UniRef100_A7PIJ8 Cluster: Chromosome... 105 2e-22
gnl|LJGI|TC78979 similar to UniRef100_A7PNV9 Cluster: Chromosome... 58 5e-08
gnl|LJGI|TC68699 similar to UniRef100_A7PNV9 Cluster: Chromosome... 58 5e-08
gnl|LJGI|TC63491 similar to UniRef100_A7PNV9 Cluster: Chromosome... 58 5e-08
>gnl|LJGI|TC76933 similar to UniRef100_A7PIJ8 Cluster: Chromosome chr13 scaffold_17,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr13 scaffold_17, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (28%)
Length = 1052
Score = 105 bits (53), Expect = 2e-22
Identities = 144/172 (83%), Gaps = 3/172 (1%)
Strand = Plus / Plus
Query: 292 agctactacagctcatccatctattatggtggtcaagaaaattattcccccagaaccagg 351
||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 510 agctacttcagctcttctatctactatggtggtcaagaaaattattcccccagaaccacc 569
Query: 352 accactgaatcccagcaaaatttcaagaaagataaggatgacgatgattctaatggaaac 411
| || | |||||| |||||||||||||| ||| || | |||| | ||||| ||
Sbjct: 570 -caacccca--ccagcatgttttcaagaaagatacggaagatggtgatcccaatggtaat 626
Query: 412 gattcaaacagtgcttcaagagggaactggtggcaaggttccctttattatt 463
|| |||| ||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 627 gactcaagcagcgcttcaagagggaactggtgggaaggttccctttattatt 678
Score = 67.9 bits (34), Expect = 5e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 64 aattttgatcatctttttggtccaaaagatccctccaccatttcatcttccacatccagc 123
||||||||||||||||||||||| || || |||| || | |||||||||| | |||||
Sbjct: 267 aattttgatcatctttttggtcccaaggactcctcgactacttcatcttcctccgccagc 326
Query: 124 atctttggctccatgttt 141
|||||||||||||||||
Sbjct: 327 ctctttggctccatgttt 344
>gnl|LJGI|TC78979 similar to UniRef100_A7PNV9 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (50%)
Length = 1215
Score = 58.0 bits (29), Expect = 5e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 421 agtgcttcaagagggaactggtggcaaggttccctttattattaa 465
|||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 657 agtgcttcaagaggaaactggtggcaaggatctctctattattaa 701
>gnl|LJGI|TC68699 similar to UniRef100_A7PNV9 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (40%)
Length = 1114
Score = 58.0 bits (29), Expect = 5e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 421 agtgcttcaagagggaactggtggcaaggttccctttattattaa 465
|||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 680 agtgcttcaagaggaaactggtggcaaggatctctctattattaa 724
>gnl|LJGI|TC63491 similar to UniRef100_A7PNV9 Cluster: Chromosome chr8 scaffold_23,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr8 scaffold_23, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (40%)
Length = 759
Score = 58.0 bits (29), Expect = 5e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 421 agtgcttcaagagggaactggtggcaaggttccctttattattaa 465
|||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 287 agtgcttcaagaggaaactggtggcaaggatctctctattattaa 331