Miyakogusa Predicted Gene

Lj0g3v0273569.1

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0273569.1 tr|D7ML46|D7ML46_ARALL Pentatricopeptide
repeat-containing protein OS=Arabidopsis lyrata subsp.
lyra,20.77,2e-18,PPR_2,Pentatricopeptide repeat;
PPR_1,Pentatricopeptide repeat; PPR,Pentatricopeptide repeat; PPR:
p,CUFF.18203.1
         (1664 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|BW604015 weakly similar to UniRef100_A7QB36 Cluster: Ch...   930   0.0  
gnl|LJGI|DC595781                                                     710   0.0  

>gnl|LJGI|BW604015 weakly similar to UniRef100_A7QB36 Cluster: Chromosome chr5
           scaffold_72, whole genome shotgun sequence; n=1; Vitis
           vinifera|Rep: Chromosome chr5 scaffold_72, whole genome
           shotgun sequence - Vitis vinifera (Grape), partial (4%)
          Length = 482

 Score =  930 bits (469), Expect = 0.0
 Identities = 469/469 (100%)
 Strand = Plus / Plus

                                                                       
Query: 78  aaggaactcaaatcacaacgccgtcgacgacgtcgccgccgcaatctgcgactccttcag 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14  aaggaactcaaatcacaacgccgtcgacgacgtcgccgccgcaatctgcgactccttcag 73

                                                                       
Query: 138 aagacgacggagctgggacgccgtcagccgcaagtttggctccctcgagttaaacgattc 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  aagacgacggagctgggacgccgtcagccgcaagtttggctccctcgagttaaacgattc 133

                                                                       
Query: 198 gttagtagagcaggtcctcttggagctcaaagacccaaacgacgccaaaaccgctctcag 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gttagtagagcaggtcctcttggagctcaaagacccaaacgacgccaaaaccgctctcag 193

                                                                       
Query: 258 cttcttccactggtccgccaaaacgcaccgtttcaaccacggcgttcgctcttacagcat 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cttcttccactggtccgccaaaacgcaccgtttcaaccacggcgttcgctcttacagcat 253

                                                                       
Query: 318 cgccatccacgttctagtcagagccggtttaatcaccgacgctcgcgcattgctcgaatc 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cgccatccacgttctagtcagagccggtttaatcaccgacgctcgcgcattgctcgaatc 313

                                                                       
Query: 378 actcgcggccaagaaccgcgatcccggtgcggttcgtgcggttaccgactcgctgatcga 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 actcgcggccaagaaccgcgatcccggtgcggttcgtgcggttaccgactcgctgatcga 373

                                                                       
Query: 438 cgcggttggttttgtctccggttcgcaccgtccggtgcttgacctcttggtccagaccta 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cgcggttggttttgtctccggttcgcaccgtccggtgcttgacctcttggtccagaccta 433

                                                            
Query: 498 cgcgaagatgaggctcacggaggctgcgttcgacgtttgctgtaacgtc 546
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cgcgaagatgaggctcacggaggctgcgttcgacgtttgctgtaacgtc 482


>gnl|LJGI|DC595781 
          Length = 374

 Score =  710 bits (358), Expect = 0.0
 Identities = 371/374 (99%), Gaps = 1/374 (0%)
 Strand = Plus / Minus

                                                                       
Query: 603 tcagagatctgatagggtgtcgttggtttgggatgtttacgagcacatgattcgtggaag 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcagagatctgatagggtgtcgttggtttgggatgtttacgagcacatgattcgtggaag 315

                                                                       
Query: 663 gaattaccctaatgcggttactttgaaaatcatgattgatgctctttgcaaggaggggct 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gaattaccctaatgcggttactttgaaaatcatgattgatgctctttgcaaggaggggct 255

                                                                       
Query: 723 tctgcagcggaacgtggacgctttggatcgaatcatgggggaaaggaaaaggagttcgca 782
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tctgcagcggaacgtggacgctttggatcgaatcatgggggaaaggaaaaggagttcgca 195

                                                                       
Query: 783 ttcgccttctgcgattgtcaattcgagcttgatattgagaatggtagagaaag-ggcact 841
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 194 ttcgccttctgcgattgtcaattcgagcttgatattgagaatggtagagaaagccccact 135

                                                                       
Query: 842 tggtggaagaggagggaaagcgcgagcgtgtggcggtcatggtggttacattgttgaaga 901
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tggtggaagaggagggaaagcgcgagcgtgtggcggtcatggtggttacattgttgaaga 75

                                                                       
Query: 902 ggctgttacaacagaatttggttcctgattcggttggttactctttgattgttcatgcca 961
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ggctgttacaacagaatttggttcctgattcggttggttactctttgattgttcatgcca 15

                         
Query: 962 aggttaggctgggg 975
           ||||||||||||||
Sbjct: 14  aggttaggctgggg 1