Miyakogusa Predicted Gene
- Lj0g3v0273279.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0273279.1 Non Chatacterized Hit- tr|B9RDP2|B9RDP2_RICCO
Dead box ATP-dependent RNA helicase, putative
OS=Ricin,87.68,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2,
ATP-binding domain; HELICASE_CTER,Helicase, C-termina,CUFF.18207.1
(1440 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC58768 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 712 0.0
gnl|LJGI|TC75782 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 658 0.0
gnl|LJGI|TC81054 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 654 0.0
gnl|LJGI|TC62152 UniRef100_Q8RXK6 Cluster: DEAD-box ATP-dependen... 482 e-135
gnl|LJGI|AV774830 similar to UniRef100_Q7XMK8 Cluster: DEAD-box ... 432 e-120
gnl|LJGI|TC62260 similar to UniRef100_Q109G2 Cluster: DEAD-box A... 323 2e-87
gnl|LJGI|FS361529 184 1e-45
gnl|LJGI|TC75651 homologue to UniRef100_A7QIS9 Cluster: Chromoso... 167 2e-40
>gnl|LJGI|TC58768 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2
scaffold_105, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr2 scaffold_105, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (26%)
Length = 948
Score = 712 bits (359), Expect = 0.0
Identities = 359/359 (100%)
Strand = Plus / Plus
Query: 220 tggctgagaagggcgcaattgggtcctgctgaatccaacggtgatgaggtcgagaagacc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tggctgagaagggcgcaattgggtcctgctgaatccaacggtgatgaggtcgagaagacc 649
Query: 280 gtgcagtctgaagctgttgactccagttcacaagattggaaggcaagactgaagattcca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtgcagtctgaagctgttgactccagttcacaagattggaaggcaagactgaagattcca 709
Query: 340 cccgctgatacacgatataagaccgaggatgtgacagcaactaaaggaaatgaatttgag 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cccgctgatacacgatataagaccgaggatgtgacagcaactaaaggaaatgaatttgag 769
Query: 400 gattactttttgaaacgtgagctgctcatggggatttatgagaagggttttgagagacct 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gattactttttgaaacgtgagctgctcatggggatttatgagaagggttttgagagacct 829
Query: 460 tctcccatccaagaagaaagcataccaattgctcttaccggtagtgacattcttgctagg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tctcccatccaagaagaaagcataccaattgctcttaccggtagtgacattcttgctagg 889
Query: 520 gctaaaaacggaactggcaaaacagctgcattttgcattccagcattggaaaaagttga 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gctaaaaacggaactggcaaaacagctgcattttgcattccagcattggaaaaagttga 948
Score = 238 bits (120), Expect = 8e-62
Identities = 120/120 (100%)
Strand = Plus / Plus
Query: 28 gtcaacagggccaacaggtacccactacatccgccaccgcccgggatcggttatggacgc 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gtcaacagggccaacaggtacccactacatccgccaccgcccgggatcggttatggacgc 457
Query: 88 ggtggtggtcccaacccgaaccctaaccctaaccaagggtttcaacctagactcccttac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggtggtggtcccaacccgaaccctaaccctaaccaagggtttcaacctagactcccttac 517
>gnl|LJGI|TC75782 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (42%)
Length = 1048
Score = 658 bits (332), Expect = 0.0
Identities = 479/528 (90%)
Strand = Plus / Plus
Query: 913 caaattctgatgttttcagcaacatttcctgttactgtaaaggatttcaaagataggttt 972
||||| ||||||| |||||| |||| |||||||||||||||||| ||||| || || | |
Sbjct: 2 caaatcctgatgtattcagctacatatcctgttactgtaaaggacttcaaggaaagatat 61
Query: 973 cttcacaaaccatatgtcattaaccttatggatgagctaactctgaagggtattacgcaa 1032
|||| || || |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 62 cttcgtaagccgtatgtcattaaccttatggatgagctaactctgaagggtattacacaa 121
Query: 1033 ttttatgcgtttgtggaagagagacagaaagtccactgcttaaatactttattttctaag 1092
|| ||||| |||||||||||||| ||||||||||||||| |||||||| | || ||||||
Sbjct: 122 ttctatgcatttgtggaagagaggcagaaagtccactgcctaaatactctcttctctaag 181
Query: 1093 ctgcaaataaaccagtcaatcattttctgcaattcagtgaatcgggttgaactccttgcc 1152
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 182 cttcaaataaaccaatcaatcatcttctgcaattcggtgaatcgggttgaactccttgcc 241
Query: 1153 aagaaaatcactgagcttgggtattcatgtttctacatacatgcgaagatgttgcaagac 1212
||||||||||| || ||||| |||||||||||||| || ||||| || ||||| ||||||
Sbjct: 242 aagaaaatcacagaacttggatattcatgtttctatattcatgcaaaaatgttacaagac 301
Query: 1213 catcgtaatagagtatttcatgacttccgcaatggtgcctgccgaaatcttgtttgtact 1272
|| ||||||||||| ||||||||||||||||| ||||||||| | ||||||||||| |||
Sbjct: 302 caccgtaatagagtttttcatgacttccgcaacggtgcctgcaggaatcttgtttgcact 361
Query: 1273 gatctttttactaggggaatagacatccaagcagttaatgttgttattaattttgatttt 1332
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 362 gatcttttcactaggggaatagatatccaagcagtcaatgttgttattaattttgatttt 421
Query: 1333 cccaagaatgcagaaacttatttgcacagggttggtcgttcagggaggtttggccacctt 1392
|||||||| |||||||||||| ||||||||||||||||||||||||| | ||| ||||||
Sbjct: 422 cccaagaacgcagaaacttatctgcacagggttggtcgttcagggagatatgggcacctt 481
Query: 1393 ggtttagcagtgaacttgatcacttatgaggatcgctttaatttatat 1440
||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 482 ggtttagcagtgaacttgatcacctatgaggatcgcttcaatttatat 529
>gnl|LJGI|TC81054 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (24%)
Length = 346
Score = 654 bits (330), Expect = 0.0
Identities = 344/346 (99%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 855 atctccagagttccaaccttctatacagcagctgattcaatttcttcctagaaaccgtca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atctccagagttccaaccttctatacagcagctgattcaatttcttcctagaaaccgtca 60
Query: 915 aattctgatgttttcagcaacattt-cctgttactgtaaaggatttcaaagataggtttc 973
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 61 aattctgatgttttcagcaacattttcctgttactgtaaaggatttcaaagataggtttc 120
Query: 974 ttcacaaaccatatgtcattaaccttatggatgagctaactctgaagggtattacgcaat 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcacaaaccatatgtcattaaccttatggatgagctaactctgaagggtattacgcaat 180
Query: 1034 tttatgcg-tttgtggaagagagacagaaagtccactgcttaaatactttattttctaag 1092
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttatgcggtttgtggaagagagacagaaagtccactgcttaaatactttattttctaag 240
Query: 1093 ctgcaaataaaccagtcaatcattttctgcaattcagtgaatcgggttgaactccttgcc 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgcaaataaaccagtcaatcattttctgcaattcagtgaatcgggttgaactccttgcc 300
Query: 1153 aagaaaatcactgagcttgggtattcatgtttctacatacatgcga 1198
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aagaaaatcactgagcttgggtattcatgtttctacatacatgcga 346
>gnl|LJGI|TC62152 UniRef100_Q8RXK6 Cluster: DEAD-box ATP-dependent RNA helicase 8; n=2;
Arabidopsis thaliana|Rep: DEAD-box ATP-dependent RNA
helicase 8 - Arabidopsis thaliana (Mouse-ear cress),
partial (21%)
Length = 1152
Score = 482 bits (243), Expect = e-135
Identities = 243/243 (100%)
Strand = Plus / Plus
Query: 1198 aagatgttgcaagaccatcgtaatagagtatttcatgacttccgcaatggtgcctgccga 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagatgttgcaagaccatcgtaatagagtatttcatgacttccgcaatggtgcctgccga 60
Query: 1258 aatcttgtttgtactgatctttttactaggggaatagacatccaagcagttaatgttgtt 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatcttgtttgtactgatctttttactaggggaatagacatccaagcagttaatgttgtt 120
Query: 1318 attaattttgattttcccaagaatgcagaaacttatttgcacagggttggtcgttcaggg 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaattttgattttcccaagaatgcagaaacttatttgcacagggttggtcgttcaggg 180
Query: 1378 aggtttggccaccttggtttagcagtgaacttgatcacttatgaggatcgctttaattta 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggtttggccaccttggtttagcagtgaacttgatcacttatgaggatcgctttaattta 240
Query: 1438 tat 1440
|||
Sbjct: 241 tat 243
>gnl|LJGI|AV774830 similar to UniRef100_Q7XMK8 Cluster: DEAD-box ATP-dependent RNA
helicase 6; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 6 - Oryza sativa
subsp. japonica (Rice), partial (34%)
Length = 524
Score = 432 bits (218), Expect = e-120
Identities = 427/490 (87%), Gaps = 5/490 (1%)
Strand = Plus / Plus
Query: 556 attccagcattggaaaaagttgatcaggataataatgttattcaagttgttatcctggtc 615
||||| |||| ||||||| | ||||| ||||| |||||||||||||| ||||| |||| |
Sbjct: 34 attcccgcataggaaaaaatcgatcacgataacaatgttattcaagtagttatactggac 93
Query: 616 ccgactcgagaattggctttgcaaacatctcaagtgtgcaaagagcttgggaagcatttg 675
|| |||||||||||| ||||||||| |||||||| | ||||||||| |||||||||
Sbjct: 94 gaaacaagagaattggcttcgcaaacatcacaagtgtgtatagagcttggaaagcatttg 153
Query: 676 aaaattcaagttatggttacaacaggtggtaccagttt-gaaag-atgatataatgcgtt 733
||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||
Sbjct: 154 aaaattcaagttatggttacaacaggtggtaccagcctagaaagtatgatatcatgcgtt 213
Query: 734 tatatcaaccggttcatttactagtcgg-aactccaggaa-gaatattagatcttgctaa 791
|||||||||| |||||||| ||||| || || ||||||| ||||| |||||||||| ||
Sbjct: 214 tatatcaaccagttcatttgctagttggcaaggccaggaaagaatactagatcttgcaaa 273
Query: 792 aaagggtgtttgtgttctgaaag-attgctctatgcttgttatggatgaggctgataagc 850
|| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaaaggtgtttgcattctgaaagcattgctctatgcttgttatggatgaggctgataagc 333
Query: 851 ttctatctccagagttccaaccttctatacagcagctgattcaatttcttcctagaaacc 910
|||| || || |||||||||||||| ||| |||||||||||||||||||| || ||||
Sbjct: 334 ttctctcccctgagttccaaccttcaatagagcagctgattcaatttctttctcctaacc 393
Query: 911 gtcaaattctgatgttttcagcaacatttcctgttactgtaaaggatttcaaagataggt 970
||||||| ||||||| |||||| |||| |||||| ||||||||||| ||||| || || |
Sbjct: 394 gtcaaatcctgatgtattcagctacatatcctgtgactgtaaaggacttcaaggaaagat 453
Query: 971 ttcttcacaaaccatatgtcattaaccttatggatgagctaactctgaagggtattacgc 1030
||||| || || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 454 atcttcgtaagccgtatgtcattaaccttatggatgagctaactctgaagggtattacac 513
Query: 1031 aattttatgc 1040
|||| |||||
Sbjct: 514 aattctatgc 523
>gnl|LJGI|TC62260 similar to UniRef100_Q109G2 Cluster: DEAD-box ATP-dependent RNA
helicase 12; n=1; Oryza sativa Japonica Group|Rep:
DEAD-box ATP-dependent RNA helicase 12 - Oryza sativa
subsp. japonica (Rice), partial (26%)
Length = 981
Score = 323 bits (163), Expect = 2e-87
Identities = 268/303 (88%)
Strand = Plus / Plus
Query: 271 gagaagaccgtgcagtctgaagctgttgactccagttcacaagattggaaggcaagactg 330
|||||||| || ||||||||| ||| ||| | ||||||||||||||||||||||||||
Sbjct: 678 gagaagactgtacagtctgaatctgccgaccctagttcacaagattggaaggcaagacta 737
Query: 331 aagattccacccgctgatacacgatataagaccgaggatgtgacagcaactaaaggaaat 390
|||||||| || | |||||||| || |||| |||||||| ||||||||||||||||||
Sbjct: 738 aagattccccctccagatacacgctaccagacagaggatgtaacagcaactaaaggaaat 797
Query: 391 gaatttgaggattactttttgaaacgtgagctgctcatggggatttatgagaagggtttt 450
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 798 gaatttgaggattactttttgaagcgtgagctgctcatgggaatttatgagaagggtttt 857
Query: 451 gagagaccttctcccatccaagaagaaagcataccaattgctcttaccggtagtgacatt 510
|| | || ||||| || |||||||||||||| || ||||||||||| ||||||||||||
Sbjct: 858 gaaaagccatctcctattcaagaagaaagcattcctattgctcttactggtagtgacatt 917
Query: 511 cttgctagggctaaaaacggaactggcaaaacagctgcattttgcattccagcattggaa 570
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||||||||
Sbjct: 918 cttgctagggcaaaaaatggaacaggcaaaactgctgcgttttgtattcccgcattggaa 977
Query: 571 aaa 573
|||
Sbjct: 978 aaa 980
>gnl|LJGI|FS361529
Length = 525
Score = 184 bits (93), Expect = 1e-45
Identities = 138/153 (90%)
Strand = Plus / Minus
Query: 1121 gcaattcagtgaatcgggttgaactccttgccaagaaaatcactgagcttgggtattcat 1180
||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct: 525 gcaattcggtgaatcgggttgaactccttgccaagaaaatcacagaacttggatattcat 466
Query: 1181 gtttctacatacatgcgaagatgttgcaagaccatcgtaatagagtatttcatgacttcc 1240
||||||| || ||||| || ||||| |||||||| ||||||||||| |||||||||||||
Sbjct: 465 gtttctatattcatgcaaaaatgttacaagaccaccgtaatagagtttttcatgacttcc 406
Query: 1241 gcaatggtgcctgccgaaatcttgtttgtactg 1273
|||| ||||||||| | ||||||||||| ||||
Sbjct: 405 gcaacggtgcctgcaggaatcttgtttgcactg 373
>gnl|LJGI|TC75651 homologue to UniRef100_A7QIS9 Cluster: Chromosome chr2 scaffold_105,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr2 scaffold_105, whole genome shotgun
sequence - Vitis vinifera (Grape), partial (11%)
Length = 552
Score = 167 bits (84), Expect = 2e-40
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1357 cacagggttggtcgttcagggaggtttggccaccttggtttagcagtgaacttgatcact 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacagggttggtcgttcagggaggtttggccaccttggtttagcagtgaacttgatcact 60
Query: 1417 tatgaggatcgctttaatttatat 1440
||||||||||||||||||||||||
Sbjct: 61 tatgaggatcgctttaatttatat 84