Miyakogusa Predicted Gene

Lj0g3v0272739.1
Show Alignment:  

BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lj0g3v0272739.1 tr|F2DD43|F2DD43_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,34.42,1e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
seg,NULL,CUFF.18037.1
         (784 letters)

Database: LJGI 
           47,486 sequences; 32,788,469 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gnl|LJGI|TC59157 similar to UniRef100_Q94II1 Cluster: ERD7 prote...    88   1e-16
gnl|LJGI|TC77513 similar to UniRef100_A7QDV5 Cluster: Chromosome...    52   5e-06

>gnl|LJGI|TC59157 similar to UniRef100_Q94II1 Cluster: ERD7 protein; n=1; Arabidopsis
           thaliana|Rep: ERD7 protein - Arabidopsis thaliana
           (Mouse-ear cress), partial (32%)
          Length = 811

 Score = 87.7 bits (44), Expect = 1e-16
 Identities = 130/156 (83%), Gaps = 2/156 (1%)
 Strand = Plus / Plus

                                                                       
Query: 512 tgagctacgggttgacgatcgcggcgaaggggcaggagggtttgctgaaggagctggata 571
           |||||||||| |||||| ||||| |||||||||||||| |||||||||||||||| ||| 
Sbjct: 506 tgagctacggtttgacggtcgcgtcgaaggggcaggagcgtttgctgaaggagctcgatg 565

                                                                       
Query: 572 gggttttgctaga-atgcagcaatttctctgtccatgaggtgtcggagaaggcgaagaag 630
            |||  ||  |||  ||||| |  |||||||| ||  |||| || ||||||| ||||| |
Sbjct: 566 cggtgctg-gagagctgcagtagcttctctgtgcagaaggtttctgagaaggtgaagagg 624

                                               
Query: 631 aaaggggaggctctggatgggtcggtggcgatggag 666
           ||||||||||| || |||||||||||||||| ||||
Sbjct: 625 aaaggggaggcgctagatgggtcggtggcgagggag 660



 Score = 58.0 bits (29), Expect = 9e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 301 tacgcccgcgtcgatgacgagatccagtggccgcttgctaaggatgagaccgc 353
           |||||||| |||| |||||||||||| |||||||| || ||||| ||||||||
Sbjct: 343 tacgcccgtgtcgctgacgagatccaatggccgctcgccaaggacgagaccgc 395


>gnl|LJGI|TC77513 similar to UniRef100_A7QDV5 Cluster: Chromosome chr4 scaffold_83,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome chr4 scaffold_83, whole genome shotgun
           sequence - Vitis vinifera (Grape), partial (72%)
          Length = 1438

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 727 gcggcgtattggaccacattggctcccaatgtggagga 764
           ||||||||||||||||| |||||||| || ||||||||
Sbjct: 625 gcggcgtattggaccacgttggctccaaacgtggagga 662