Miyakogusa Predicted Gene
- Lj0g3v0270709.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0270709.1 tr|G7KVV0|G7KVV0_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_7g050520 PE=4 SV=1,33.79,2e-18,RVT_3,NULL;
FBA_1,F-box associated domain, type 1; F_box_assoc_1: F-box protein
interaction domain,F,gene.g21015.t1.1
(1563 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC78617 similar to UniRef100_A2Q4Y0 Cluster: F-box prot... 521 e-147
gnl|LJGI|TC78296 464 e-130
gnl|LJGI|TC79437 454 e-127
gnl|LJGI|DC598731 similar to UniRef100_Q2HS69 Cluster: Cyclin-li... 301 7e-81
gnl|LJGI|TC79482 weakly similar to UniRef100_A7Q9Q9 Cluster: Chr... 283 2e-75
gnl|LJGI|TC73392 256 4e-67
gnl|LJGI|TC67010 weakly similar to UniRef100_A4UV34 Cluster: F-b... 232 5e-60
gnl|LJGI|CB826878 similar to UniRef100_Q9BKD3 Cluster: TSO45-4B;... 111 1e-23
gnl|LJGI|TC59517 weakly similar to UniRef100_Q2HRF5 Cluster: Cyc... 105 8e-22
gnl|LJGI|GO035798 weakly similar to UniRef100_Q12X80 Cluster: 4F... 101 1e-20
>gnl|LJGI|TC78617 similar to UniRef100_A2Q4Y0 Cluster: F-box protein interaction
domain; n=1; Medicago truncatula|Rep: F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (8%)
Length = 518
Score = 521 bits (263), Expect = e-147
Identities = 263/263 (100%)
Strand = Plus / Plus
Query: 409 ggggttttgggaggatgcctatgtatttctcaaaataacaaggaaacgcatagttttgtg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggggttttgggaggatgcctatgtatttctcaaaataacaaggaaacgcatagttttgtg 60
Query: 469 gtatggcaaatgaaggagtttggagtgcacgagtcttggactcaattgtttaacattatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtatggcaaatgaaggagtttggagtgcacgagtcttggactcaattgtttaacattatt 120
Query: 529 gtccatgaaagaattcttcacacgccctgttttgctatgtgcatgtctgagaatggtgat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtccatgaaagaattcttcacacgccctgttttgctatgtgcatgtctgagaatggtgat 180
Query: 589 gccctgttgtttgcaaaatctggtgtgtcccaagcagttctctataaccagagagaaaag 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccctgttgtttgcaaaatctggtgtgtcccaagcagttctctataaccagagagaaaag 240
Query: 649 aaattcgaagacacaaaaattgg 671
|||||||||||||||||||||||
Sbjct: 241 aaattcgaagacacaaaaattgg 263
Score = 291 bits (147), Expect = 7e-78
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 672 gtctgagaatggtgatgccctgttgtttgcaaaatctggtgtgtcccaagcagttctcta 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 gtctgagaatggtgatgccctgttgtttgcaaaatctggtgtgtcccaagcagttctcta 224
Query: 732 taaccagagagaaaagaaattcgaagacacaaaaattggtaacaacatcgttggttccta 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 taaccagagagaaaagaaattcgaagacacaaaaattggtaacaacatcgttggttccta 284
Query: 792 tgtcaggaattacattgaaagcttggt 818
|||||||||||||||||||||||||||
Sbjct: 285 tgtcaggaattacattgaaagcttggt 311
>gnl|LJGI|TC78296
Length = 551
Score = 464 bits (234), Expect = e-130
Identities = 297/318 (93%)
Strand = Plus / Plus
Query: 351 gtcattgccttattgtcctcggcgcagcaaagaattcgaagattttgtgccaattcttgg 410
||||||||||||||||||| ||||| | ||||||||||| |||||| | ||||||||||
Sbjct: 1 gtcattgccttattgtccttggcgccgaaaagaattcgaccattttgggtcaattcttgg 60
Query: 411 ggttttgggaggatgcctatgtatttctcaaaataacaaggaaacgcatagttttgtggt 470
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 ggttttgagaggatgcctatgtatttctcaaaataacaaggaaacacatagttttgtggt 120
Query: 471 atggcaaatgaaggagtttggagtgcacgagtcttggactcaattgtttaacattattgt 530
|| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 121 atcgcaaatgaaggagtatggagtgaacgagtcatggactcaattgtttaacattattgt 180
Query: 531 ccatgaaagaattcttcacacgccctgttttgctatgtgcatgtctgagaatggtgatgc 590
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccatgaaagaattcttcactcgccctgttttgctatgtgcatgtctgagaatggtgatgt 240
Query: 591 cctgttgtttgcaaaatctggtgtgtcccaagcagttctctataaccagagagaaaagaa 650
||||||||||||| | |||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 241 cctgttgtttgcagagtctggtgtgtcccaagcagttctctataaccagagagataataa 300
Query: 651 attcgaagacacaaaaat 668
||| |||||||| |||||
Sbjct: 301 attagaagacacgaaaat 318
Score = 208 bits (105), Expect = 8e-53
Identities = 132/141 (93%)
Strand = Plus / Plus
Query: 672 gtctgagaatggtgatgccctgttgtttgcaaaatctggtgtgtcccaagcagttctcta 731
||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 223 gtctgagaatggtgatgtcctgttgtttgcagagtctggtgtgtcccaagcagttctcta 282
Query: 732 taaccagagagaaaagaaattcgaagacacaaaaattggtaacaacatcgttggttccta 791
|||||||||||| || ||||| |||||||| ||||| | |||||||||||||||||||||
Sbjct: 283 taaccagagagataataaattagaagacacgaaaatcgctaacaacatcgttggttccta 342
Query: 792 tgtcaggaattacattgaaag 812
|||||||||||||||||||||
Sbjct: 343 tgtcaggaattacattgaaag 363
>gnl|LJGI|TC79437
Length = 744
Score = 454 bits (229), Expect = e-127
Identities = 326/357 (91%), Gaps = 1/357 (0%)
Strand = Plus / Plus
Query: 307 attgtttcgtttgatttggggaaagaagagtgggcacaacaactgtc-attgccttattg 365
||||||||||||||||||| |||||||||||| |||| || || ||| |||||||||| |
Sbjct: 1 attgtttcgtttgatttggagaaagaagagtgtgcacgaccaccgtccattgccttatcg 60
Query: 366 tcctcggcgcagcaaagaattcgaagattttgtgccaattcttggggttttgggaggatg 425
|||| ||||| | |||||||||| |||||| | ||||||||||||||||| |||||||
Sbjct: 61 tccttggcgccgacaagaattcgaccattttgggtcaattcttggggttttgagaggatg 120
Query: 426 cctatgtatttctcaaaataacaaggaaacgcatagttttgtggtatggcaaatgaagga 485
|||||||||||||||| || |||||||||| |||||||||||||||| ||||||||||||
Sbjct: 121 cctatgtatttctcaatatcacaaggaaacacatagttttgtggtatcgcaaatgaagga 180
Query: 486 gtttggagtgcacgagtcttggactcaattgtttaacattattgtccatgaaagaattct 545
|| ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 gtatggagtgaacgagtcatggactcaattgtttaacattattgtccatgcaagaattct 240
Query: 546 tcacacgccctgttttgctatgtgcatgtctgagaatggtgatgccctgttgtttgcaaa 605
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 241 tcactcgccctgttttgctatgtgcatgtctgagaatggtgatgtcctgttgtttgcaga 300
Query: 606 atctggtgtgtcccaagcagttctctataaccagagagaaaagaaattcgaagacac 662
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct: 301 gtctggtgtgtcccaagcagttctctataaccagagagataataaattagaagacac 357
Score = 192 bits (97), Expect = 5e-48
Identities = 130/141 (92%)
Strand = Plus / Plus
Query: 672 gtctgagaatggtgatgccctgttgtttgcaaaatctggtgtgtcccaagcagttctcta 731
||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 268 gtctgagaatggtgatgtcctgttgtttgcagagtctggtgtgtcccaagcagttctcta 327
Query: 732 taaccagagagaaaagaaattcgaagacacaaaaattggtaacaacatcgttggttccta 791
|||||||||||| || ||||| |||||||| || || | |||||||||||||||||||||
Sbjct: 328 taaccagagagataataaattagaagacacgaacatcgctaacaacatcgttggttccta 387
Query: 792 tgtcaggaattacattgaaag 812
||||||| |||||||||||||
Sbjct: 388 tgtcaggcattacattgaaag 408
>gnl|LJGI|DC598731 similar to UniRef100_Q2HS69 Cluster: Cyclin-like F-box; F-box
protein interaction domain; n=1; Medicago
truncatula|Rep: Cyclin-like F-box; F-box protein
interaction domain - Medicago truncatula (Barrel medic),
partial (14%)
Length = 592
Score = 301 bits (152), Expect = 7e-81
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 1 atgtctcaagattcgccgccttcgtgttccccgggctttctccatctcgggattggttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtctcaagattcgccgccttcgtgttccccgggctttctccatctcgggattggttat 500
Query: 61 gattgtttaagtgacacctacaaggtggttggagtgaaccctgacgtgacaatggtgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gattgtttaagtgacacctacaaggtggttggagtgaaccctgacgtgacaatggtgaat 560
Query: 121 gtttacaacatgggtgataaatgttggagtac 152
||||||||||||||||||||||||||||||||
Sbjct: 561 gtttacaacatgggtgataaatgttggagtac 592
>gnl|LJGI|TC79482 weakly similar to UniRef100_A7Q9Q9 Cluster: Chromosome chr5
scaffold_67, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_67, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (10%)
Length = 551
Score = 283 bits (143), Expect = 2e-75
Identities = 209/231 (90%)
Strand = Plus / Plus
Query: 1 atgtctcaagattcgccgccttcgtgttccccgggctttctccatctcgggattggttat 60
||||||||||||||||| ||||| || ||||| || ||||||||| ||| ||||||||
Sbjct: 279 atgtctcaagattcgccaccttcatggtccccccgcaatctccatcttgggtttggttat 338
Query: 61 gattgtttaagtgacacctacaaggtggttggagtgaaccctgacgtgacaatggtgaat 120
||||||| ||||||||||||||||||||| ||| ||| ||||| | ||||||||||||||
Sbjct: 339 gattgttcaagtgacacctacaaggtggtcggaatgatccctggcttgacaatggtgaat 398
Query: 121 gtttacaacatgggtgataaatgttggagtacaattcaaatttttcctcatacccctatg 180
|||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||
Sbjct: 399 gtttacaacatgggtgataattgttggagaacaattcaaatttcccctcatgcccctatg 458
Query: 181 catctccaaggatttgaagtttatgtgagtaacactcttaattggttagca 231
||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 459 catctccaaggatctgcagtttatgtgagtaacactcttaattggttagca 509
Score = 61.9 bits (31), Expect = 1e-08
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 296 atccgtacttcattgtttcgtttgatttggggaaa 330
|||||||||||||||||||||||||||||| ||||
Sbjct: 517 atccgtacttcattgtttcgtttgatttggagaaa 551
>gnl|LJGI|TC73392
Length = 647
Score = 256 bits (129), Expect = 4e-67
Identities = 209/233 (89%), Gaps = 2/233 (0%)
Strand = Plus / Plus
Query: 1 atgtctcaagattcgccgccttcgtgttccccgggctttctccatctcgggatt-ggtta 59
||||||||||||||||| ||||| || ||||| || ||||||||| ||| || |||||
Sbjct: 313 atgtctcaagattcgccaccttcatggtccccccgcaatctccatcttgggttttggtta 372
Query: 60 tgatt-gtttaagtgacacctacaaggtggttggagtgaaccctgacgtgacaatggtga 118
||||| ||| ||||||||||||||||||||| ||| ||| ||||| | ||||||||||||
Sbjct: 373 tgatttgttcaagtgacacctacaaggtggtcggaatgatccctggcttgacaatggtga 432
Query: 119 atgtttacaacatgggtgataaatgttggagtacaattcaaatttttcctcataccccta 178
|||||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||
Sbjct: 433 atgtttacaacatgggtgataattgttggagaacaattcaaatttcccctcatgccccta 492
Query: 179 tgcatctccaaggatttgaagtttatgtgagtaacactcttaattggttagca 231
||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 493 tgcatctccaaggatctgcagtttatgtgagtaacactcttaattggttagca 545
Score = 147 bits (74), Expect = 2e-34
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 296 atccgtacttcattgtttcgtttgatttggggaaagaagagtgggcacaacaactgtcat 355
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 553 atccgtacttcattgtttcgtttgatttggagaaagaagagtgtgcacaacaactgtcat 612
Query: 356 tgccttattgtcctcggcgcagcaaagaattcga 389
|||||||||||||| ||||| | |||||||||||
Sbjct: 613 tgccttattgtccttggcgccgaaaagaattcga 646
>gnl|LJGI|TC67010 weakly similar to UniRef100_A4UV34 Cluster: F-box domain-containing
protein; n=2; Solanum|Rep: F-box domain-containing
protein - Solanum tuberosum (Potato), partial (15%)
Length = 1074
Score = 232 bits (117), Expect = 5e-60
Identities = 183/205 (89%)
Strand = Plus / Plus
Query: 1 atgtctcaagattcgccgccttcgtgttccccgggctttctccatctcgggattggttat 60
||||||||||||||||| ||||| || ||||| || ||||||||| ||| ||||||||
Sbjct: 450 atgtctcaagattcgccaccttcatggtccccccgcaatctccatcttgggtttggttat 509
Query: 61 gattgtttaagtgacacctacaaggtggttggagtgaaccctgacgtgacaatggtgaat 120
||||||| ||||||||||||||||||||| ||| ||| ||||| | ||||||||||||||
Sbjct: 510 gattgttcaagtgacacctacaaggtggtcggaatgatccctggcttgacaatggtgaat 569
Query: 121 gtttacaacatgggtgataaatgttggagtacaattcaaatttttcctcatacccctatg 180
|||||||||||||||||||| |||||||| ||||||||||||| |||||| ||||||||
Sbjct: 570 gtttacaacatgggtgataattgttggagaacaattcaaatttcccctcatgcccctatg 629
Query: 181 catctccaaggatttgaagtttatg 205
||||||||||||| || ||||||||
Sbjct: 630 catctccaaggatctgcagtttatg 654
>gnl|LJGI|CB826878 similar to UniRef100_Q9BKD3 Cluster: TSO45-4B; n=1; Taenia
solium|Rep: TSO45-4B - Taenia solium (Pork tapeworm),
partial (5%)
Length = 635
Score = 111 bits (56), Expect = 1e-23
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 426 cctatgtatttctcaaaataacaaggaaacgcatagttttgtggtatggcaaatgaagga 485
||||||| ||||||||||| ||||| |||| | || ||||||||| ||||||||||||||
Sbjct: 410 cctatgtgtttctcaaaatgacaagaaaacccgtaattttgtggtttggcaaatgaagga 469
Query: 486 gtttggagtgcacgagtcttggactcaattgtttaacattattg 529
||||||||||||| |||| |||||||| ||||| ||||| ||||
Sbjct: 470 gtttggagtgcacaagtcatggactcagttgttcaacatcattg 513
Score = 58.0 bits (29), Expect = 2e-07
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 673 tctgagaatggtgatgccctgttgtttgcaaaatctggtgtgtcccaagcagttctctat 732
||||||||||| |||||| ||||||| ||| || ||||| |||||||||| ||||||||
Sbjct: 563 tctgagaatggggatgccttgttgttgtcaacatatggtgggtcccaagcaattctctat 622
Query: 733 a 733
|
Sbjct: 623 a 623
>gnl|LJGI|TC59517 weakly similar to UniRef100_Q2HRF5 Cluster: Cyclin-like F-box; n=1;
Medicago truncatula|Rep: Cyclin-like F-box - Medicago
truncatula (Barrel medic), partial (42%)
Length = 1382
Score = 105 bits (53), Expect = 8e-22
Identities = 189/233 (81%), Gaps = 6/233 (2%)
Strand = Plus / Plus
Query: 294 tgatccgtacttcattgtttcgtttgatttggggaaagaagagtgggcacaacaactgtc 353
|||||| ||||| ||| ||||||||||||||||||||||| | ||||||| ||||
Sbjct: 720 tgatccatacttaattttttcgtttgatttggggaaagaaaacaatgcacaac---tgtc 776
Query: 354 attgccttattgtcctcggcgcagcaaagaattcgaagattttgtgccaattcttggggt 413
|||||||||| || |||| ||||| | ||| || |||||| ||||| |||||||||
Sbjct: 777 attgccttatagtgctcgacgcagatatgaaatccccgattttaggccaaatcttggggt 836
Query: 414 tttgggaggatgcctatgtatttctcaaaataacaaggaaacgcatagttttgtggtatg 473
||||| ||| ||||||||| ||| ||| | ||||||| || | ||| |||| | | ||
Sbjct: 837 tttggaaggttgcctatgtttttgtcacactaacaagaaatctcat---tttgcgatttg 893
Query: 474 gcaaatgaaggagtttggagtgcacgagtcttggactcaattgtttaacatta 526
||||||||| ||||||||||||||| | ||||||||||| |||||||| ||||
Sbjct: 894 gcaaatgaaagagtttggagtgcacaattcttggactcagttgtttaaaatta 946
Score = 54.0 bits (27), Expect = 3e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 53 ttggttatgattgtttaagtgacacctacaa 83
||||||||||||||| |||||||||||||||
Sbjct: 470 ttggttatgattgttcaagtgacacctacaa 500
Score = 54.0 bits (27), Expect = 3e-06
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 198 agtttatgtgagtaacactcttaattggttagcaactctacca 240
|||| ||||||| ||||||||||||||||||||| |||||||
Sbjct: 636 agttaatgtgagcaacactcttaattggttagcatttctacca 678
>gnl|LJGI|GO035798 weakly similar to UniRef100_Q12X80 Cluster: 4Fe-4S ferredoxin,
iron-sulfur binding; n=1; Methanococcoides burtonii DSM
6242|Rep: 4Fe-4S ferredoxin, iron-sulfur binding -
Methanococcoides burtonii (strain DSM 6242), partial
(10%)
Length = 581
Score = 101 bits (51), Expect = 1e-20
Identities = 139/163 (85%), Gaps = 4/163 (2%)
Strand = Plus / Plus
Query: 472 tggcaaatgaaggagtttggagtgcacgagtcttggactcaattgtttaacattattgtc 531
||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||| ||
Sbjct: 81 tggcaaatgaaggagtttggagtacacaagtcttggactcagttgttgaacattattttc 140
Query: 532 catgaaagaattc-ttcacacgccctgttttgctatgtgcatgtctgagaatggtgatgc 590
||| || ||||| ||| ||||| |||| | |||||||||||||| |||||||||||
Sbjct: 141 tatggaa-aattcagtcaatggccctattttccgatgtgcatgtctgataatggtgatgc 199
Query: 591 cctgttgtttgcaa-aatctggtgtgtcccaagcagttctcta 632
| ||||| |||||| | | | ||| ||||||||||||||||||
Sbjct: 200 cttgttg-ttgcaagattattgtgggtcccaagcagttctcta 241