Miyakogusa Predicted Gene
- Lj0g3v0270299.2
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0270299.2 tr|Q9AXJ3|Q9AXJ3_MANES RNA polymerase I, II and
III subunit RPB8 (Fragment) OS=Manihot esculenta
PE=,66.13,7e-19,DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT
RPABC3,NULL; DNA-DIRECTED RNA POLYMERASES I, II,,CUFF.17875.2
(294 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|TC62125 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA... 583 e-166
gnl|LJGI|TC58624 weakly similar to UniRef100_A7QAN3 Cluster: Chr... 583 e-166
gnl|LJGI|TC59922 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA... 454 e-127
gnl|LJGI|TC59182 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA... 448 e-126
>gnl|LJGI|TC62125 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA polymerase I, II
and III subunit RPB8; n=2; Manihot esculenta|Rep: RNA
polymerase I, II and III subunit RPB8 - Manihot
esculenta (Cassava) (Manioc), partial (93%)
Length = 731
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 208
Query: 61 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 268
Query: 121 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 328
Query: 181 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccgggaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccgggaaat 388
Query: 241 cggcaatcactggccgataattttgaatatgtcatgtatgggaagctctacaag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cggcaatcactggccgataattttgaatatgtcatgtatgggaagctctacaag 442
>gnl|LJGI|TC58624 weakly similar to UniRef100_A7QAN3 Cluster: Chromosome chr5
scaffold_72, whole genome shotgun sequence; n=1; Vitis
vinifera|Rep: Chromosome chr5 scaffold_72, whole genome
shotgun sequence - Vitis vinifera (Grape), partial (79%)
Length = 815
Score = 583 bits (294), Expect = e-166
Identities = 294/294 (100%)
Strand = Plus / Plus
Query: 1 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 190
Query: 61 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 250
Query: 121 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 310
Query: 181 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccgggaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccgggaaat 370
Query: 241 cggcaatcactggccgataattttgaatatgtcatgtatgggaagctctacaag 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cggcaatcactggccgataattttgaatatgtcatgtatgggaagctctacaag 424
>gnl|LJGI|TC59922 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA polymerase I, II
and III subunit RPB8; n=2; Manihot esculenta|Rep: RNA
polymerase I, II and III subunit RPB8 - Manihot
esculenta (Cassava) (Manioc), partial (68%)
Length = 745
Score = 454 bits (229), Expect = e-127
Identities = 235/237 (99%)
Strand = Plus / Plus
Query: 1 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atggttgagactctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 179
Query: 61 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 239
Query: 121 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 299
Query: 181 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccggga 237
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 300 ttggttccgacactgaatccagatggcaccccaggcactggctactatgttccggga 356
>gnl|LJGI|TC59182 weakly similar to UniRef100_Q9AXJ3 Cluster: RNA polymerase I, II
and III subunit RPB8; n=2; Manihot esculenta|Rep: RNA
polymerase I, II and III subunit RPB8 - Manihot
esculenta (Cassava) (Manioc), partial (93%)
Length = 916
Score = 448 bits (226), Expect = e-126
Identities = 277/294 (94%)
Strand = Plus / Plus
Query: 1 atggttgagattctcttcgacgatatctttagagtggaaaaattgaacccagatgacaaa 60
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 223 atggttgagattctctttgacgatatctttagagtggaaaaattaaacccagatgacaag 282
Query: 61 aaattatttgagaaagttacacgcattgaagcgagaagtgaaaggtttgacatgtttatg 120
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 283 aaattatttgagaaagttacccgcattgaagcaagaagtgaaagatttgacatgtttatg 342
Query: 121 cacctagacatcaattctgagttatatccattaaaggtgggtcagaagttcgctctatta 180
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct: 343 cacctagacatcaattctgagttatatccgttaaaggtgggtcagaaattcgctctttta 402
Query: 181 ttggttccgacactgaatccagatggcaccccagacactggctactatgttccgggaaat 240
||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct: 403 ctggttccaacactgaatccagatggtaccccagacactggctactatattccgggcaat 462
Query: 241 cggcaatcactggccgataattttgaatatgtcatgtatgggaagctctacaag 294
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 463 cggcaatcactggctgataattttgaatatgttatgtatggcaagctctacaag 516