Miyakogusa Predicted Gene
- Lj0g3v0269349.1
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lj0g3v0269349.1 tr|B9MZ67|B9MZ67_POPTR Chromatin remodeling
complex subunit OS=Populus trichocarpa GN=CHR952 PE=4
SV,49.15,0.000000000000001,seg,NULL; HELICASE_CTER,Helicase,
C-terminal; no description,NULL; SUBFAMILY NOT NAMED,NULL;
SWI/SNF,CUFF.17791.1
(2538 letters)
Database: LJGI
47,486 sequences; 32,788,469 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gnl|LJGI|GO031549 similar to UniRef100_Q85G39 Cluster: ORF40; n=... 920 0.0
gnl|LJGI|TC59373 similar to UniRef100_A9RL16 Cluster: Predicted ... 488 e-137
>gnl|LJGI|GO031549 similar to UniRef100_Q85G39 Cluster: ORF40; n=1; Cyanidioschyzon
merolae|Rep: ORF40 - Cyanidioschyzon merolae (Red alga),
partial (32%)
Length = 583
Score = 920 bits (464), Expect = 0.0
Identities = 481/489 (98%)
Strand = Plus / Plus
Query: 1 atgggaaatggtactcgttctagtcaaagggctaaggatggtgaaaattataacgagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 atgggaaatggtactcgttctagtcaaagggctaaggatggtgaaaattataacgagagg 154
Query: 61 atgaaacaggatagtgagaaaggaaaaatcagcccaagtcctactgaatcagatacaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atgaaacaggatagtgagaaaggaaaaatcagcccaagtcctactgaatcagatacaacg 214
Query: 121 ggtgtcagaaggtctgctagagagacaccatcaaagaagataattccaagctcttcaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggtgtcagaaggtctgctagagagacaccatcaaagaagataattccaagctcttcaagt 274
Query: 181 gctcggaaatctgagcgacttgagaagggaacaccgccatctccagcagtaagtaagaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gctcggaaatctgagcgacttgagaagggaacaccgccatctccagcagtaagtaagaag 334
Query: 241 tctgaaagggtcgnnnnnnngaatatgccaagtcctttgaggagatctggaagagctagg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tctgaaagggtcgaaaaaaagaatatgccaagtcctttgaggagatctggaagagctagg 394
Query: 301 ggtcagtcttccactccttctgattctaaaagctcagggtcgttgaattcaaagcagaat 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggtcagtcttccactccttctgattctaaaagctcagggtcgttgaattcaaagcagaaa 454
Query: 361 cagaagagtgtaaaacaggttacactagaagctaaggaagtcaatcaaagtgaggaacat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cagaagagtgtaaaacaggttacactagaagctaaggaagtcaatcaaagtgaggaacat 514
Query: 421 gacccggaaactttgcaggtgaaagtaaagagaatggacgcccgtatgtatcggtctctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gacccggaaactttgcaggtgaaagtaaagagaatggacgcccgtatgtatcggtctctc 574
Query: 481 tttaaaaaa 489
|||||||||
Sbjct: 575 tttaaaaaa 583
>gnl|LJGI|TC59373 similar to UniRef100_A9RL16 Cluster: Predicted protein; n=1;
Physcomitrella patens subsp. patens|Rep: Predicted
protein - Physcomitrella patens subsp. patens, partial
(32%)
Length = 826
Score = 488 bits (246), Expect = e-137
Identities = 249/250 (99%)
Strand = Plus / Plus
Query: 573 aggagaggagacattacagatgtcaatgtcgaattccatattagatggtgagttagtgag 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aggagaggagacattacagatgtcaatgtcgaattccatattagatggtgagttagtgag 286
Query: 633 gaatggtcatgatgggggtgaaatgtcaatactgtccaagagaaagggaatgacggtgga 692
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 287 gaatggtcatgatgggggtgaaatgtcaatactgtccaagagaaagggaatggcggtgga 346
Query: 693 catggattcagatccttctgcctcactatctaaggatgacaactgcaattttattcctaa 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 catggattcagatccttctgcctcactatctaaggatgacaactgcaattttattcctaa 406
Query: 753 tgctagtccttcgatgtcagatggcaatgttatcgggactgatgggccatattccaaacg 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgctagtccttcgatgtcagatggcaatgttatcgggactgatgggccatattccaaacg 466
Query: 813 agtaaggttg 822
||||||||||
Sbjct: 467 agtaaggttg 476
Score = 436 bits (220), Expect = e-121
Identities = 223/224 (99%)
Strand = Plus / Plus
Query: 277 ttgaggagatctggaagagctaggggtcagtcttccactccttctgattctaaaagctca 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ttgaggagatctggaagagctaggggtcagtcttccactccttctgattctaaaagctca 65
Query: 337 gggtcgttgaattcaaagcagaatcagaagagtgtaaaacaggttacactagaagctaag 396
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 66 gggtcgttgaattcaaagcagaaacagaagagtgtaaaacaggttacactagaagctaag 125
Query: 397 gaagtcaatcaaagtgaggaacatgacccggaaactttgcaggtgaaagtaaagagaatg 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gaagtcaatcaaagtgaggaacatgacccggaaactttgcaggtgaaagtaaagagaatg 185
Query: 457 gacgcccgtatgtatcggtctctctttaaaaaaccgaaggaagg 500
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gacgcccgtatgtatcggtctctctttaaaaaaccgaaggaagg 229